Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   NMQ00_RS15730 Genome accession   NZ_CP101462
Coordinates   3029269..3029778 (-) Length   169 a.a.
NCBI ID   WP_024371077.1    Uniprot ID   A0A4R0Z174
Organism   Exiguobacterium aurantiacum strain CX2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3024269..3034778
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMQ00_RS15710 (NMQ00_15695) dnaB 3025044..3026396 (-) 1353 WP_021067865.1 replicative DNA helicase -
  NMQ00_RS15715 (NMQ00_15700) rplI 3026415..3026858 (-) 444 WP_255177439.1 50S ribosomal protein L9 -
  NMQ00_RS15720 (NMQ00_15705) - 3026855..3028819 (-) 1965 WP_255177440.1 DHH family phosphoesterase -
  NMQ00_RS15725 (NMQ00_15710) rpsR 3028998..3029228 (-) 231 WP_015880232.1 30S ribosomal protein S18 -
  NMQ00_RS15730 (NMQ00_15715) ssbA 3029269..3029778 (-) 510 WP_024371077.1 single-stranded DNA-binding protein Machinery gene
  NMQ00_RS15735 (NMQ00_15720) rpsF 3029816..3030103 (-) 288 WP_021067861.1 30S ribosomal protein S6 -
  NMQ00_RS15740 (NMQ00_15725) ychF 3030234..3031334 (-) 1101 WP_214718806.1 redox-regulated ATPase YchF -
  NMQ00_RS15745 (NMQ00_15730) - 3031487..3031690 (-) 204 WP_034780313.1 DUF951 domain-containing protein -
  NMQ00_RS15750 (NMQ00_15735) - 3031680..3032618 (-) 939 WP_255177441.1 mechanosensitive ion channel family protein -
  NMQ00_RS15755 (NMQ00_15740) yyaC 3032788..3033414 (+) 627 WP_255177442.1 spore protease YyaC -
  NMQ00_RS15760 (NMQ00_15745) - 3033387..3034169 (-) 783 WP_029596439.1 ParB/RepB/Spo0J family partition protein -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18185.00 Da        Isoelectric Point: 5.0077

>NTDB_id=710142 NMQ00_RS15730 WP_024371077.1 3029269..3029778(-) (ssbA) [Exiguobacterium aurantiacum strain CX2]
MINRVVLVGRLTRDPEMRYTQSGIAVTRFTLACDRPFTGQDGKREADFIDCVVWRKQAENVAQYLKKGSMAGVDGRLQIS
SYEGQDGQRRYRAEVVADSVRFLEPRGASTQRDTAPAGDVFGGGESSGSGWGAAASSTSSQSSNSNKGFEADPFSGGGKI
DLSDDDLPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=710142 NMQ00_RS15730 WP_024371077.1 3029269..3029778(-) (ssbA) [Exiguobacterium aurantiacum strain CX2]
ATGATTAACCGAGTTGTGTTAGTTGGTCGATTGACACGCGATCCAGAAATGCGTTACACGCAGAGCGGGATTGCCGTAAC
TCGCTTCACTCTCGCTTGCGATCGTCCATTCACTGGACAAGATGGGAAGCGCGAGGCGGACTTTATTGATTGTGTCGTTT
GGCGCAAACAAGCAGAGAACGTGGCACAATATTTGAAAAAAGGCAGCATGGCCGGCGTAGACGGTCGCCTTCAAATCAGT
AGTTACGAAGGTCAAGATGGCCAACGTCGTTACCGGGCAGAAGTCGTAGCCGATAGCGTACGCTTCCTTGAACCACGCGG
TGCTTCAACGCAACGTGATACAGCACCGGCTGGAGATGTCTTCGGTGGTGGTGAGTCAAGTGGATCAGGATGGGGCGCAG
CCGCTTCTTCGACTTCATCTCAGTCCTCGAACTCAAACAAAGGTTTTGAAGCCGATCCGTTCTCGGGCGGCGGAAAAATC
GACTTATCGGATGACGATCTTCCATTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4R0Z174

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

52.542

100

0.55
  ssb Latilactobacillus sakei subsp. sakei 23K

52.353

100

0.527
  ssb Glaesserella parasuis strain SC1401

32.105

100

0.361