Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   NMG48_RS14240 Genome accession   NZ_CP101416
Coordinates   3098175..3098546 (-) Length   123 a.a.
NCBI ID   WP_271252176.1    Uniprot ID   -
Organism   Pseudanabaena sp. Chao 1811     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3093175..3103546
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMG48_RS14215 - 3093361..3094470 (-) 1110 WP_271252172.1 fatty acid desaturase -
  NMG48_RS14220 - 3094642..3096228 (-) 1587 WP_271252173.1 mercuric reductase -
  NMG48_RS14225 - 3096287..3096661 (-) 375 WP_271252174.1 DoxX family protein -
  NMG48_RS14230 - 3096663..3097547 (-) 885 WP_271252175.1 DUF72 domain-containing protein -
  NMG48_RS14235 - 3097634..3098143 (+) 510 WP_169361937.1 phosphate-starvation-inducible PsiE family protein -
  NMG48_RS14240 pilH 3098175..3098546 (-) 372 WP_271252176.1 response regulator Machinery gene
  NMG48_RS14245 - 3098821..3099807 (+) 987 WP_271252177.1 ATP-binding cassette domain-containing protein -
  NMG48_RS14250 - 3100068..3100298 (+) 231 WP_271252178.1 hypothetical protein -
  NMG48_RS14255 - 3100295..3101674 (-) 1380 WP_271252179.1 hypothetical protein -

Sequence

Protein


Download         Length: 123 a.a.        Molecular weight: 13855.18 Da        Isoelectric Point: 6.2250

>NTDB_id=710086 NMG48_RS14240 WP_271252176.1 3098175..3098546(-) (pilH) [Pseudanabaena sp. Chao 1811]
MVKVLVVDDSPMVLEMVSAHLKQHGMEVTEANNGAEAVEKLKAFTPDLVVTDVVMPQMNGYELCRWIKNNASTKDVPVIM
CTTKSEEFDKYWGMKQGADAYLTKPYHPPELIKTIKQLLSQVK

Nucleotide


Download         Length: 372 bp        

>NTDB_id=710086 NMG48_RS14240 WP_271252176.1 3098175..3098546(-) (pilH) [Pseudanabaena sp. Chao 1811]
ATGGTAAAAGTCCTCGTAGTGGACGACAGTCCGATGGTGTTGGAGATGGTCTCGGCACATTTAAAACAACATGGTATGGA
AGTTACGGAAGCTAATAACGGTGCTGAGGCAGTAGAAAAGCTTAAGGCTTTTACTCCCGATCTCGTTGTTACCGATGTGG
TCATGCCTCAAATGAATGGTTATGAGTTATGCCGTTGGATCAAAAATAATGCCTCTACGAAGGATGTACCCGTAATTATG
TGTACAACCAAAAGTGAGGAATTTGATAAGTACTGGGGTATGAAGCAGGGGGCAGATGCTTACTTAACTAAGCCTTATCA
CCCACCTGAATTAATCAAAACCATTAAGCAGTTACTTAGTCAGGTCAAATAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

62.185

96.748

0.602
  pilG Acinetobacter baumannii strain A118

38.655

96.748

0.374
  micA Streptococcus pneumoniae Cp1015

37.19

98.374

0.366