Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   NMG48_RS13900 Genome accession   NZ_CP101416
Coordinates   3018466..3018834 (+) Length   122 a.a.
NCBI ID   WP_271252113.1    Uniprot ID   -
Organism   Pseudanabaena sp. Chao 1811     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3013466..3023834
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMG48_RS13885 pyk 3014228..3015661 (+) 1434 WP_271252110.1 pyruvate kinase -
  NMG48_RS13890 - 3015830..3017374 (-) 1545 WP_271252111.1 peptide ligase PGM1-related protein -
  NMG48_RS13895 - 3017532..3018173 (-) 642 WP_271252112.1 response regulator transcription factor -
  NMG48_RS13900 pilH 3018466..3018834 (+) 369 WP_271252113.1 response regulator Machinery gene
  NMG48_RS13905 - 3019089..3020390 (+) 1302 WP_271252114.1 glutamate-5-semialdehyde dehydrogenase -
  NMG48_RS21715 - 3020569..3020652 (+) 84 WP_345961268.1 hypothetical protein -
  NMG48_RS13910 - 3020673..3021215 (+) 543 WP_271252115.1 hypothetical protein -
  NMG48_RS13915 - 3021367..3022110 (+) 744 WP_271252116.1 transposase -
  NMG48_RS13920 - 3022114..3023325 (-) 1212 WP_271252117.1 IS256 family transposase -
  NMG48_RS21720 - 3023512..3023760 (+) 249 WP_345961269.1 hypothetical protein -

Sequence

Protein


Download         Length: 122 a.a.        Molecular weight: 13841.95 Da        Isoelectric Point: 5.1972

>NTDB_id=710085 NMG48_RS13900 WP_271252113.1 3018466..3018834(+) (pilH) [Pseudanabaena sp. Chao 1811]
MSKILVVEDSKTQRELIANLLKNNQFEVMTAKNGVEALSQAEVQHPDLAILDIVMPEMNGYELCRKLRDNPETWNINIII
CSTKSTSVDRHWGFRQGANAYISKPFVPEDLVDTVKELLKIA

Nucleotide


Download         Length: 369 bp        

>NTDB_id=710085 NMG48_RS13900 WP_271252113.1 3018466..3018834(+) (pilH) [Pseudanabaena sp. Chao 1811]
ATGTCCAAAATTCTTGTTGTTGAAGATAGTAAAACTCAAAGAGAATTAATTGCAAATCTGCTTAAAAACAATCAATTTGA
AGTGATGACAGCTAAAAATGGGGTTGAGGCTCTTTCTCAAGCGGAAGTGCAACATCCTGATCTGGCAATTTTGGATATTG
TGATGCCTGAAATGAATGGCTATGAGCTTTGTCGCAAACTCAGAGATAATCCTGAAACTTGGAATATCAACATCATTATA
TGTTCGACGAAATCCACAAGTGTCGATCGCCATTGGGGATTTCGCCAAGGGGCAAACGCCTATATCAGTAAGCCTTTTGT
GCCAGAAGATTTAGTTGACACGGTAAAAGAGTTGCTAAAAATAGCATAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

52.5

98.361

0.516
  micA Streptococcus pneumoniae Cp1015

38.333

98.361

0.377
  vicR Streptococcus mutans UA159

37.5

98.361

0.369