Detailed information
Bioinformatically predicted
Overview
| Name | comD | Type | Machinery gene |
| Locus tag | K6J58_RS02920 | Genome accession | NZ_AP018772 |
| Coordinates | 581353..581766 (+) | Length | 137 a.a. |
| NCBI ID | WP_005686898.1 | Uniprot ID | - |
| Organism | Haemophilus influenzae strain CHBN-III-1 isolate 15H02 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 576353..586766
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K6J58_RS02900 (CHBNIII1_05620) | - | 576841..579435 (-) | 2595 | WP_005686901.1 | penicillin-binding protein 1A | - |
| K6J58_RS02905 (CHBNIII1_05630) | comA | 579534..580331 (+) | 798 | WP_005686900.1 | pilus assembly protein PilM | Machinery gene |
| K6J58_RS02910 (CHBNIII1_05640) | comB | 580332..580838 (+) | 507 | WP_005649305.1 | competence protein ComB | Machinery gene |
| K6J58_RS02915 (CHBNIII1_05650) | comC | 580835..581356 (+) | 522 | WP_005686899.1 | competence protein ComC | Machinery gene |
| K6J58_RS02920 (CHBNIII1_05660) | comD | 581353..581766 (+) | 414 | WP_005686898.1 | pilus assembly protein PilP | Machinery gene |
| K6J58_RS02925 (CHBNIII1_05670) | comE | 581776..583113 (+) | 1338 | WP_005686897.1 | type IV pilus secretin PilQ family protein | Machinery gene |
| K6J58_RS02930 (CHBNIII1_05680) | - | 583126..583812 (+) | 687 | WP_005686895.1 | ComF family protein | - |
| K6J58_RS02935 (CHBNIII1_05690) | nfuA | 583888..584484 (+) | 597 | WP_005656459.1 | Fe-S biogenesis protein NfuA | - |
| K6J58_RS02940 (CHBNIII1_05700) | nudC | 584551..585345 (+) | 795 | WP_005686893.1 | NAD(+) diphosphatase | - |
| K6J58_RS02945 (CHBNIII1_05710) | - | 585381..585971 (+) | 591 | WP_005686892.1 | YjaG family protein | - |
| K6J58_RS02950 (CHBNIII1_05720) | - | 586111..586383 (+) | 273 | WP_005630954.1 | HU family DNA-binding protein | - |
Sequence
Protein
Download Length: 137 a.a. Molecular weight: 15677.82 Da Isoelectric Point: 4.5625
>NTDB_id=71000 K6J58_RS02920 WP_005686898.1 581353..581766(+) (comD) [Haemophilus influenzae strain CHBN-III-1 isolate 15H02]
MKHWFFLIILFFINCTWGQDPFDKTQRNRSQFDNAQTVMEQTEIISSDVPNNLCGADENRQAAEIPLNALKLVGVVISKD
KAFALLQDQGLQVYSVLEGVDVAQEGYIVEKINQNNVQFMRKLGEQCDSSEWKKLSF
MKHWFFLIILFFINCTWGQDPFDKTQRNRSQFDNAQTVMEQTEIISSDVPNNLCGADENRQAAEIPLNALKLVGVVISKD
KAFALLQDQGLQVYSVLEGVDVAQEGYIVEKINQNNVQFMRKLGEQCDSSEWKKLSF
Nucleotide
Download Length: 414 bp
>NTDB_id=71000 K6J58_RS02920 WP_005686898.1 581353..581766(+) (comD) [Haemophilus influenzae strain CHBN-III-1 isolate 15H02]
ATGAAACATTGGTTTTTCCTGATTATATTATTTTTTATAAATTGCACTTGGGGACAAGATCCTTTCGATAAAACACAGCG
TAACCGTTCTCAGTTTGATAACGCACAAACAGTAATGGAACAGACAGAAATAATTTCCTCAGATGTGCCTAATAATCTAT
GCGGAGCGGATGAAAATCGCCAAGCAGCTGAAATTCCGTTGAACGCTTTAAAATTGGTGGGGGTAGTGATTTCTAAAGAT
AAAGCCTTTGCCTTGTTGCAAGATCAAGGTTTGCAAGTTTACAGCGTTTTAGAGGGCGTTGATGTGGCTCAAGAGGGCTA
TATTGTAGAAAAAATCAACCAAAACAATGTTCAATTTATGCGCAAGCTAGGAGAGCAATGTGATAGTAGTGAATGGAAAA
AATTAAGTTTTTAA
ATGAAACATTGGTTTTTCCTGATTATATTATTTTTTATAAATTGCACTTGGGGACAAGATCCTTTCGATAAAACACAGCG
TAACCGTTCTCAGTTTGATAACGCACAAACAGTAATGGAACAGACAGAAATAATTTCCTCAGATGTGCCTAATAATCTAT
GCGGAGCGGATGAAAATCGCCAAGCAGCTGAAATTCCGTTGAACGCTTTAAAATTGGTGGGGGTAGTGATTTCTAAAGAT
AAAGCCTTTGCCTTGTTGCAAGATCAAGGTTTGCAAGTTTACAGCGTTTTAGAGGGCGTTGATGTGGCTCAAGAGGGCTA
TATTGTAGAAAAAATCAACCAAAACAATGTTCAATTTATGCGCAAGCTAGGAGAGCAATGTGATAGTAGTGAATGGAAAA
AATTAAGTTTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comD | Haemophilus influenzae Rd KW20 |
98.54 |
100 |
0.985 |
| comD | Haemophilus influenzae 86-028NP |
97.81 |
100 |
0.978 |