Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   K6J58_RS02915 Genome accession   NZ_AP018772
Coordinates   580835..581356 (+) Length   173 a.a.
NCBI ID   WP_005686899.1    Uniprot ID   -
Organism   Haemophilus influenzae strain CHBN-III-1 isolate 15H02     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 575835..586356
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6J58_RS02895 (CHBNIII1_05610) - 575920..576765 (-) 846 WP_005686902.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -
  K6J58_RS02900 (CHBNIII1_05620) - 576841..579435 (-) 2595 WP_005686901.1 penicillin-binding protein 1A -
  K6J58_RS02905 (CHBNIII1_05630) comA 579534..580331 (+) 798 WP_005686900.1 pilus assembly protein PilM Machinery gene
  K6J58_RS02910 (CHBNIII1_05640) comB 580332..580838 (+) 507 WP_005649305.1 competence protein ComB Machinery gene
  K6J58_RS02915 (CHBNIII1_05650) comC 580835..581356 (+) 522 WP_005686899.1 competence protein ComC Machinery gene
  K6J58_RS02920 (CHBNIII1_05660) comD 581353..581766 (+) 414 WP_005686898.1 pilus assembly protein PilP Machinery gene
  K6J58_RS02925 (CHBNIII1_05670) comE 581776..583113 (+) 1338 WP_005686897.1 type IV pilus secretin PilQ family protein Machinery gene
  K6J58_RS02930 (CHBNIII1_05680) - 583126..583812 (+) 687 WP_005686895.1 ComF family protein -
  K6J58_RS02935 (CHBNIII1_05690) nfuA 583888..584484 (+) 597 WP_005656459.1 Fe-S biogenesis protein NfuA -
  K6J58_RS02940 (CHBNIII1_05700) nudC 584551..585345 (+) 795 WP_005686893.1 NAD(+) diphosphatase -
  K6J58_RS02945 (CHBNIII1_05710) - 585381..585971 (+) 591 WP_005686892.1 YjaG family protein -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 20076.23 Da        Isoelectric Point: 9.6750

>NTDB_id=70999 K6J58_RS02915 WP_005686899.1 580835..581356(+) (comC) [Haemophilus influenzae strain CHBN-III-1 isolate 15H02]
MKAFFNDPFTPFGKWLSQPFYVHGLTFLLLLSAVIFRPVLDYIEASTRFDETEYELAKKSSELLHQQKILTSLQQQSESR
KLSPELAAQIIPLNKQIQRLATRYGLSQHLRWEMGQKPILHLQLTGHFEKTKTFLTALLANSSQLSVSRLQFIKPEDNPL
QTEIIFQLDKETK

Nucleotide


Download         Length: 522 bp        

>NTDB_id=70999 K6J58_RS02915 WP_005686899.1 580835..581356(+) (comC) [Haemophilus influenzae strain CHBN-III-1 isolate 15H02]
ATGAAAGCTTTTTTTAACGATCCTTTTACTCCTTTTGGAAAATGGCTAAGCCAGCCTTTTTATGTGCACGGTTTAACCTT
TTTATTGCTATTAAGTGCGGTGATTTTTCGCCCCGTTTTAGATTATATAGAGGCTAGTACGCGTTTTGATGAAACTGAGT
ATGAATTAGCTAAAAAAAGTTCGGAATTGTTGCATCAACAGAAAATTTTAACTTCTCTACAGCAGCAATCGGAAAGTCGA
AAACTTTCTCCAGAACTGGCTGCACAAATTATTCCTTTGAATAAACAAATTCAACGTTTAGCTACACGCTACGGTTTATC
TCAGCATTTACGTTGGGAAATGGGGCAAAAGCCTATTTTGCATTTACAGCTTACAGGTCATTTTGAAAAAACGAAGACAT
TTTTAACCGCACTTTTGGCTAATTCGTCACAGCTTTCAGTGAGTCGCTTGCAGTTTATCAAACCAGAAGACAACCCATTG
CAAACCGAAATCATTTTTCAGCTAGATAAGGAAACAAAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Haemophilus influenzae 86-028NP

94.798

100

0.948
  comC Haemophilus influenzae Rd KW20

93.064

100

0.931

Multiple sequence alignment