Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   NM232_RS05915 Genome accession   NZ_CP101399
Coordinates   1044212..1044853 (-) Length   213 a.a.
NCBI ID   WP_007500477.1    Uniprot ID   -
Organism   Bacillus altitudinis strain HM-7     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1039212..1049853
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NM232_RS05880 - 1040340..1040771 (+) 432 WP_008345843.1 Na(+)/H(+) antiporter subunit B -
  NM232_RS05885 - 1040771..1041112 (+) 342 WP_003213576.1 Na(+)/H(+) antiporter subunit C -
  NM232_RS05890 - 1041105..1042583 (+) 1479 WP_056702623.1 Na+/H+ antiporter subunit D -
  NM232_RS05895 - 1042590..1043069 (+) 480 WP_008345848.1 Na+/H+ antiporter subunit E -
  NM232_RS05900 - 1043069..1043350 (+) 282 WP_008345849.1 Na(+)/H(+) antiporter subunit F1 -
  NM232_RS05905 mnhG 1043334..1043708 (+) 375 WP_035701201.1 monovalent cation/H(+) antiporter subunit G -
  NM232_RS05910 - 1043799..1044188 (-) 390 WP_008345855.1 hotdog fold thioesterase -
  NM232_RS05915 comA 1044212..1044853 (-) 642 WP_007500477.1 response regulator transcription factor Regulator
  NM232_RS05920 comP 1044934..1047246 (-) 2313 WP_035701206.1 ATP-binding protein Regulator
  NM232_RS05925 comX 1047287..1047457 (-) 171 WP_074041927.1 competence pheromone ComX -
  NM232_RS05930 - 1047454..1048368 (-) 915 WP_065460972.1 polyprenyl synthetase family protein -
  NM232_RS05935 degQ 1048520..1048660 (-) 141 WP_003213123.1 degradation enzyme regulation protein DegQ Regulator
  NM232_RS05940 - 1049166..1049519 (+) 354 WP_058213658.1 hypothetical protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24140.53 Da        Isoelectric Point: 4.5688

>NTDB_id=709978 NM232_RS05915 WP_007500477.1 1044212..1044853(-) (comA) [Bacillus altitudinis strain HM-7]
MKKILVIDDHPAVMEGTKSILESDQQLSVDCLSPDAEGAFLKTHDFSIYDVILMDLNLGDINGMDIAKQILETNQQVKII
IYTGYEVDDYFEEAIRAGLHGAISKTETKDKIIEYIHRTLQGEVVIQLSYLKKLISQQQEKPEQAQQTDHELLTERECLI
LREVEKGYTNQEIADVLHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSESVL

Nucleotide


Download         Length: 642 bp        

>NTDB_id=709978 NM232_RS05915 WP_007500477.1 1044212..1044853(-) (comA) [Bacillus altitudinis strain HM-7]
ATGAAGAAGATATTGGTCATTGATGATCATCCGGCTGTCATGGAAGGGACAAAAAGCATATTAGAATCAGATCAGCAGCT
ATCAGTCGATTGTTTAAGTCCTGATGCAGAAGGCGCCTTTTTAAAGACGCATGACTTTTCCATCTATGATGTGATCTTGA
TGGATTTAAATCTCGGGGATATCAATGGAATGGACATTGCCAAACAAATTCTAGAAACGAATCAACAAGTGAAAATTATC
ATTTATACAGGATATGAAGTAGATGATTATTTCGAAGAGGCCATTCGAGCTGGATTGCATGGTGCAATAAGTAAAACAGA
GACAAAAGACAAAATTATTGAATACATACACCGCACATTGCAAGGAGAAGTTGTCATTCAGCTATCCTATTTAAAGAAAT
TAATTTCACAGCAGCAAGAGAAGCCAGAACAGGCGCAGCAGACGGATCATGAGCTGTTAACAGAGCGTGAATGTTTAATC
TTAAGAGAAGTGGAAAAAGGGTACACAAACCAAGAGATCGCCGATGTGCTTCATTTGAGCAAACGCTCAATTGAATACAG
TTTGACCTCCATCTTTAATAAGCTGAATGTTGGATCTCGAACAGAAGCGGTGTTAATTGCAAAATCGGAAAGTGTGCTGT
AA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-207)

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

71.495

100

0.718