Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   H7680_RS09865 Genome accession   NZ_AP023394
Coordinates   2024693..2025286 (-) Length   197 a.a.
NCBI ID   WP_003058778.1    Uniprot ID   A0ABU0A6N1
Organism   Streptococcus dysgalactiae subsp. equisimilis strain 159     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2019693..2030286
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7680_RS09835 (SDSE159_19310) - 2020046..2020315 (-) 270 WP_003045720.1 IreB family regulatory phosphoprotein -
  H7680_RS09840 (SDSE159_19320) spx 2020427..2020825 (-) 399 WP_003053105.1 transcriptional regulator Spx -
  H7680_RS09845 (SDSE159_19330) recA 2021119..2022255 (-) 1137 WP_003058758.1 recombinase RecA Machinery gene
  H7680_RS09850 (SDSE159_19340) cinA 2022360..2023631 (-) 1272 WP_003058772.1 competence/damage-inducible protein A Machinery gene
  H7680_RS09855 (SDSE159_19350) - 2023755..2024084 (-) 330 WP_223846052.1 VOC family protein -
  H7680_RS09860 (SDSE159_19360) - 2024111..2024683 (-) 573 WP_003058799.1 DNA-3-methyladenine glycosylase I -
  H7680_RS09865 (SDSE159_19370) ruvA 2024693..2025286 (-) 594 WP_003058778.1 Holliday junction branch migration protein RuvA Machinery gene
  H7680_RS09870 (SDSE159_19380) - 2025288..2026508 (-) 1221 WP_014612636.1 MFS transporter -
  H7680_RS09875 (SDSE159_19390) hexB 2026519..2028501 (-) 1983 WP_014612637.1 DNA mismatch repair endonuclease MutL Machinery gene

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21741.99 Da        Isoelectric Point: 5.7322

>NTDB_id=70989 H7680_RS09865 WP_003058778.1 2024693..2025286(-) (ruvA) [Streptococcus dysgalactiae subsp. equisimilis strain 159]
MYDYIKGQLTKITAKYIVVETNGLGYIINVANPYSFTDSVNQLVTIYLHQVIREDAHLLFGFHTEDEKDVFLKLISVSGI
GPTTALAIVAVDDNQGLVNAIDTSDIKYLTKFPKIGKKTAQQMVLDLAGKFVEVPQETSKAKPSTSSNNDQLDEAIEALL
ALGYKATELKKIRAFFEGTSETAEQYIKSALKLLMKG

Nucleotide


Download         Length: 594 bp        

>NTDB_id=70989 H7680_RS09865 WP_003058778.1 2024693..2025286(-) (ruvA) [Streptococcus dysgalactiae subsp. equisimilis strain 159]
ATGTACGATTATATTAAAGGTCAATTGACCAAAATTACGGCAAAATACATTGTCGTTGAAACAAATGGACTAGGCTATAT
TATCAATGTAGCAAATCCTTATAGCTTTACAGATAGTGTCAACCAACTGGTAACTATTTACCTGCATCAAGTGATTCGTG
AGGATGCTCACTTGTTGTTTGGGTTTCATACGGAAGACGAAAAAGATGTTTTTCTGAAATTAATTTCTGTATCAGGCATT
GGTCCGACAACAGCTCTCGCTATTGTGGCAGTTGATGATAATCAGGGGCTTGTTAATGCCATTGATACCAGTGACATCAA
ATACTTGACTAAATTTCCTAAAATCGGGAAAAAAACGGCACAACAGATGGTTCTTGACTTAGCCGGAAAATTTGTGGAGG
TTCCACAAGAGACCAGTAAAGCAAAACCGTCTACCTCCTCAAACAATGACCAGTTGGATGAGGCTATTGAAGCCCTTCTT
GCCCTAGGTTATAAAGCAACAGAGCTGAAAAAAATTCGTGCCTTCTTTGAGGGGACCTCTGAGACGGCAGAGCAATACAT
CAAATCAGCATTGAAACTGTTAATGAAAGGGTAG

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA N terminal domain (RuvA_N)

(1-61)

RuvA, C-terminal domain (RuvA_C)

(150-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

68.02

100

0.68
  ruvA Streptococcus pneumoniae R6

68.02

100

0.68
  ruvA Streptococcus pneumoniae D39

68.02

100

0.68
  ruvA Bacillus subtilis subsp. subtilis str. 168

39.409

100

0.406