Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   PFZ59_RS07060 Genome accession   NZ_CP116393
Coordinates   1385689..1386285 (+) Length   198 a.a.
NCBI ID   WP_002935848.1    Uniprot ID   A0ABV2ES67
Organism   Streptococcus suis strain SS/UPM/MY/F001     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1380689..1391285
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PFZ59_RS07040 (PFZ59_07040) vicX 1380773..1381576 (+) 804 WP_277696693.1 MBL fold metallo-hydrolase Regulator
  PFZ59_RS07045 (PFZ59_07045) - 1381686..1382690 (+) 1005 WP_277696681.1 IS5 family transposase -
  PFZ59_RS07050 (PFZ59_07050) - 1383139..1383513 (+) 375 WP_228476612.1 ATP-binding cassette domain-containing protein -
  PFZ59_RS07055 (PFZ59_07055) pbp2b 1383605..1385680 (+) 2076 WP_277696694.1 penicillin-binding protein PBP2B -
  PFZ59_RS07060 (PFZ59_07060) recR 1385689..1386285 (+) 597 WP_002935848.1 recombination mediator RecR Machinery gene
  PFZ59_RS07065 (PFZ59_07065) - 1386390..1387436 (+) 1047 WP_277696695.1 D-alanine--D-alanine ligase -
  PFZ59_RS07070 (PFZ59_07070) - 1387524..1387904 (+) 381 WP_277696696.1 OsmC family peroxiredoxin -
  PFZ59_RS07075 (PFZ59_07075) - 1387905..1388981 (+) 1077 WP_277696697.1 ABC transporter permease -
  PFZ59_RS07080 (PFZ59_07080) - 1388991..1389659 (+) 669 WP_024407021.1 ABC transporter ATP-binding protein -
  PFZ59_RS07085 (PFZ59_07085) murF 1389714..1391075 (+) 1362 WP_277696698.1 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21693.80 Da        Isoelectric Point: 4.4757

>NTDB_id=709875 PFZ59_RS07060 WP_002935848.1 1385689..1386285(+) (recR) [Streptococcus suis strain SS/UPM/MY/F001]
MLYPTPIAKLIDSYSKLPGIGIKTATRLAFYTIGMEDDVVNEFAKNLLAAKRDLSYCSICGNLTDQDPCAICQDSTRDQS
TILIVEDSRDVTALENIQEYHGLYHVLHGLISPMNGIGPDDINLKTLLTRLMDNEVTEVIVATNATADGEATSMYISRVL
KPAGIKVTRLARGLAVGSDIEYADEVTLLRAIENRTEL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=709875 PFZ59_RS07060 WP_002935848.1 1385689..1386285(+) (recR) [Streptococcus suis strain SS/UPM/MY/F001]
ATGCTTTACCCTACACCTATTGCCAAGTTAATTGATAGTTATTCTAAATTGCCAGGTATCGGTATAAAAACGGCTACCCG
TTTAGCTTTTTATACTATTGGCATGGAGGATGATGTCGTTAATGAATTTGCGAAAAATTTATTGGCAGCCAAGCGAGACC
TATCTTATTGCTCTATTTGTGGTAATTTGACAGATCAGGACCCCTGTGCCATTTGCCAGGACTCAACCCGAGACCAATCT
ACTATTTTGATTGTAGAGGATAGTCGAGATGTTACAGCTTTGGAAAATATTCAAGAATACCACGGTCTTTATCATGTCTT
GCATGGCTTGATTTCTCCCATGAATGGTATCGGACCAGATGATATTAATTTGAAAACCCTCCTTACTCGCCTGATGGACA
ATGAGGTTACAGAAGTTATTGTGGCGACCAATGCAACAGCAGATGGAGAGGCTACATCTATGTATATCTCGCGTGTCCTC
AAACCTGCAGGAATCAAAGTAACCCGACTAGCTCGTGGCTTAGCGGTAGGCAGTGATATTGAATATGCAGATGAAGTGAC
CCTGTTGAGGGCTATTGAAAACCGCACAGAGCTATAG

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(40-78)

Toprim domain (Toprim_4)

(80-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

87.879

100

0.879
  recR Bacillus subtilis subsp. subtilis str. 168

64.141

100

0.641
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

49.744

98.485

0.49