Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   PFZ59_RS07040 Genome accession   NZ_CP116393
Coordinates   1380773..1381576 (+) Length   267 a.a.
NCBI ID   WP_277696693.1    Uniprot ID   -
Organism   Streptococcus suis strain SS/UPM/MY/F001     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1375773..1386576
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PFZ59_RS07015 (PFZ59_07015) - 1376202..1376900 (-) 699 WP_063077049.1 amino acid ABC transporter permease -
  PFZ59_RS07020 (PFZ59_07020) - 1376915..1377754 (-) 840 WP_277696690.1 transporter substrate-binding domain-containing protein -
  PFZ59_RS07025 (PFZ59_07025) - 1377765..1378526 (-) 762 WP_277696691.1 amino acid ABC transporter ATP-binding protein -
  PFZ59_RS07030 (PFZ59_07030) yycF 1378720..1379424 (+) 705 WP_208581972.1 response regulator YycF -
  PFZ59_RS07035 (PFZ59_07035) micB 1379417..1380766 (+) 1350 WP_277696692.1 cell wall metabolism sensor histidine kinase VicK Regulator
  PFZ59_RS07040 (PFZ59_07040) vicX 1380773..1381576 (+) 804 WP_277696693.1 MBL fold metallo-hydrolase Regulator
  PFZ59_RS07045 (PFZ59_07045) - 1381686..1382690 (+) 1005 WP_277696681.1 IS5 family transposase -
  PFZ59_RS07050 (PFZ59_07050) - 1383139..1383513 (+) 375 WP_228476612.1 ATP-binding cassette domain-containing protein -
  PFZ59_RS07055 (PFZ59_07055) pbp2b 1383605..1385680 (+) 2076 WP_277696694.1 penicillin-binding protein PBP2B -
  PFZ59_RS07060 (PFZ59_07060) recR 1385689..1386285 (+) 597 WP_002935848.1 recombination mediator RecR Machinery gene

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29645.73 Da        Isoelectric Point: 5.7755

>NTDB_id=709874 PFZ59_RS07040 WP_277696693.1 1380773..1381576(+) (vicX) [Streptococcus suis strain SS/UPM/MY/F001]
MIGKGFNYSILASGSSGNCFYLETDKKKILVDAGLSGKKISSLLAEIDRKPEDIDAILVTHEHSDHIHGIGVLARKYGMD
IYANELTWQAMESKLGKIDVAQKHIFELGAMKTFGDLDIESFGVSHDAACPQFYRFMKDDKSFVMLTDTGYVSDRMVGIV
ENADAYLIESNHDIEILRSGSYSWNLKQRILSDKGHLCNEDGADAMIRSLGNRTKKIYLGHLSKENNIKELAHMTMVNQL
AQADLGVGVDFQVYDTSPDTATPLTKI

Nucleotide


Download         Length: 804 bp        

>NTDB_id=709874 PFZ59_RS07040 WP_277696693.1 1380773..1381576(+) (vicX) [Streptococcus suis strain SS/UPM/MY/F001]
ATGATCGGAAAAGGTTTTAATTATAGTATTTTAGCTTCGGGGTCCAGCGGGAATTGTTTTTACCTAGAAACAGATAAAAA
GAAAATCTTAGTGGATGCTGGCTTATCAGGGAAAAAGATTAGCAGTCTTTTGGCGGAAATTGATCGAAAGCCTGAGGATA
TTGATGCTATCCTGGTAACGCATGAACATAGCGATCACATCCATGGTATCGGTGTTTTAGCACGTAAGTACGGCATGGAC
ATTTATGCCAATGAATTGACCTGGCAGGCTATGGAGAGCAAATTGGGCAAGATTGATGTGGCTCAAAAACATATCTTCGA
ATTGGGTGCTATGAAGACTTTTGGCGACCTAGATATTGAGTCCTTTGGAGTTAGTCACGATGCTGCATGTCCGCAATTTT
ACCGTTTTATGAAGGATGACAAATCCTTTGTTATGTTGACGGATACAGGCTATGTCAGTGACCGCATGGTTGGAATTGTA
GAAAATGCCGATGCTTATTTGATTGAATCGAACCATGATATTGAAATTTTGCGCTCGGGTTCATATTCATGGAATTTGAA
GCAACGGATTCTATCCGATAAGGGCCATCTTTGTAACGAAGACGGTGCTGATGCCATGATTCGCTCGTTGGGAAATCGGA
CCAAAAAGATTTACCTAGGGCATTTATCAAAGGAAAACAATATCAAGGAATTGGCTCACATGACCATGGTTAATCAGTTG
GCTCAGGCTGATTTAGGAGTTGGAGTGGATTTCCAAGTCTATGACACATCGCCAGATACAGCGACTCCCTTGACCAAGAT
TTGA

Domains

Predicted by InterProScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

77.528

100

0.775