Detailed information    

insolico Bioinformatically predicted

Overview

Name   micB   Type   Regulator
Locus tag   PFZ59_RS07035 Genome accession   NZ_CP116393
Coordinates   1379417..1380766 (+) Length   449 a.a.
NCBI ID   WP_277696692.1    Uniprot ID   -
Organism   Streptococcus suis strain SS/UPM/MY/F001     
Function   repress competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1374417..1385766
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PFZ59_RS07005 (PFZ59_07005) - 1374619..1375482 (+) 864 WP_277696689.1 hypothetical protein -
  PFZ59_RS07010 (PFZ59_07010) - 1375528..1376187 (-) 660 WP_208581969.1 amino acid ABC transporter permease -
  PFZ59_RS07015 (PFZ59_07015) - 1376202..1376900 (-) 699 WP_063077049.1 amino acid ABC transporter permease -
  PFZ59_RS07020 (PFZ59_07020) - 1376915..1377754 (-) 840 WP_277696690.1 transporter substrate-binding domain-containing protein -
  PFZ59_RS07025 (PFZ59_07025) - 1377765..1378526 (-) 762 WP_277696691.1 amino acid ABC transporter ATP-binding protein -
  PFZ59_RS07030 (PFZ59_07030) yycF 1378720..1379424 (+) 705 WP_208581972.1 response regulator YycF -
  PFZ59_RS07035 (PFZ59_07035) micB 1379417..1380766 (+) 1350 WP_277696692.1 cell wall metabolism sensor histidine kinase VicK Regulator
  PFZ59_RS07040 (PFZ59_07040) vicX 1380773..1381576 (+) 804 WP_277696693.1 MBL fold metallo-hydrolase Regulator
  PFZ59_RS07045 (PFZ59_07045) - 1381686..1382690 (+) 1005 WP_277696681.1 IS5 family transposase -
  PFZ59_RS07050 (PFZ59_07050) - 1383139..1383513 (+) 375 WP_228476612.1 ATP-binding cassette domain-containing protein -
  PFZ59_RS07055 (PFZ59_07055) pbp2b 1383605..1385680 (+) 2076 WP_277696694.1 penicillin-binding protein PBP2B -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 51093.17 Da        Isoelectric Point: 4.5562

>NTDB_id=709873 PFZ59_RS07035 WP_277696692.1 1379417..1380766(+) (micB) [Streptococcus suis strain SS/UPM/MY/F001]
MINRLRYLMTTAEFWFVVILIGFLIALTVLLIENYRDNKQIKQLNQKVNALIEGNYADVLDMRGSPEITDMANSLNDLSE
VIRLTHDNLEQEKTRLTSILSYMSDGVIATDRIGRIIMINDMAQKQLGLSNPKQEQYHLLEVLDLSDRYTLRDLLAQTPE
IVIDHTNENEEFLTLRANFATIRSESGLISGLVVVLHDMTEQAKEERERRLFVSNVSHELRTPLTSVKSYLEALDEGALT
ESVAPSFVKVSLDETNRMMRMITDLLSLSRIDNQVGQIDVELINFTAFVTFILNRFDQMKNTDSDKVYTIVRDYQISPIW
VEIDTDKMTQVLDNILNNAIKYSPDGGTITFSMKTTDSQLIVSVSDEGLGIPKADLPRIFDRFYRVDKARSRAQGGTGLG
LAIAKEIVKQHKGFIWAKSEYGHGSTFTIVLPYSKDIALDEWDDSDEEE

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=709873 PFZ59_RS07035 WP_277696692.1 1379417..1380766(+) (micB) [Streptococcus suis strain SS/UPM/MY/F001]
ATGATTAATCGATTACGTTATTTAATGACCACGGCAGAATTTTGGTTTGTTGTCATTTTGATTGGCTTTCTAATTGCTCT
AACGGTCCTTTTGATTGAAAACTATCGGGATAATAAGCAAATTAAACAACTCAATCAAAAAGTCAATGCCTTAATTGAGG
GGAATTATGCAGATGTGTTAGACATGAGGGGAAGTCCTGAAATAACAGATATGGCTAATTCCCTCAATGATTTGTCCGAG
GTTATCCGCTTAACTCACGATAATTTAGAACAAGAAAAGACGCGTCTGACTTCCATCCTGTCCTATATGAGTGACGGTGT
TATTGCTACAGACCGTATCGGACGGATCATCATGATTAACGATATGGCCCAGAAACAGTTGGGGTTATCTAACCCAAAGC
AGGAGCAGTATCACCTGCTCGAGGTTTTAGATTTATCAGACCGTTATACATTGAGAGATTTGTTGGCTCAGACACCTGAG
ATTGTGATTGATCACACCAATGAAAACGAAGAATTTTTGACTTTACGCGCTAATTTTGCCACGATTCGTAGTGAGAGTGG
TCTGATTTCTGGCTTGGTTGTCGTCTTGCATGATATGACCGAGCAGGCCAAGGAAGAGCGGGAACGTAGGCTGTTTGTGT
CAAATGTGAGTCATGAATTGCGTACGCCATTGACTTCCGTTAAATCCTATCTAGAGGCTCTGGATGAGGGAGCGCTGACG
GAGTCTGTTGCACCGAGTTTTGTCAAGGTATCCTTAGATGAGACCAACCGCATGATGCGGATGATTACAGACCTCCTAAG
CTTATCGCGTATTGATAATCAAGTTGGTCAGATAGATGTTGAACTGATAAACTTTACTGCTTTTGTGACCTTTATTCTTA
ACCGTTTTGACCAAATGAAAAATACTGATTCTGATAAGGTCTATACGATTGTTCGTGACTATCAAATCAGCCCTATTTGG
GTTGAGATTGATACAGATAAGATGACTCAGGTTTTAGATAATATCTTAAATAATGCCATTAAATATTCGCCAGATGGCGG
GACAATTACCTTCAGCATGAAGACCACAGATAGCCAGTTGATTGTATCCGTATCAGACGAAGGTCTGGGGATTCCGAAAG
CAGATTTACCTAGAATTTTTGACCGATTTTATCGCGTAGACAAGGCACGATCTCGTGCCCAAGGTGGTACAGGTCTTGGT
TTAGCTATTGCAAAAGAAATCGTAAAACAGCATAAGGGTTTTATCTGGGCTAAAAGCGAATATGGTCATGGCTCAACGTT
TACAATTGTCTTGCCGTACAGCAAGGACATCGCACTAGATGAGTGGGATGATTCAGATGAGGAAGAATAG

Domains

Predicted by InterProScan.

PAS fold (PAS)

(96-199)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(324-434)

His Kinase A (phospho-acceptor) domain (HisKA)

(209-273)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  micB Streptococcus pneumoniae Cp1015

70.183

97.105

0.682
  vicK Streptococcus mutans UA159

70.72

89.755

0.635