Detailed information    

insolico Bioinformatically predicted

Overview

Name   comR   Type   Regulator
Locus tag   PFZ59_RS03185 Genome accession   NZ_CP116393
Coordinates   612420..613331 (+) Length   303 a.a.
NCBI ID   WP_208582383.1    Uniprot ID   -
Organism   Streptococcus suis strain SS/UPM/MY/F001     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 607420..618331
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PFZ59_RS03170 (PFZ59_03170) - 607836..609131 (-) 1296 WP_009911009.1 sugar ABC transporter permease -
  PFZ59_RS03175 (PFZ59_03175) - 609238..610497 (-) 1260 WP_277697467.1 extracellular solute-binding protein -
  PFZ59_RS03180 (PFZ59_03180) malQ 610801..612339 (+) 1539 WP_208582382.1 4-alpha-glucanotransferase -
  PFZ59_RS03185 (PFZ59_03185) comR 612420..613331 (+) 912 WP_208582383.1 XRE family transcriptional regulator Regulator
  PFZ59_RS03190 (PFZ59_03190) - 613684..613977 (+) 294 WP_208582384.1 lactococcin 972 family bacteriocin -
  PFZ59_RS03195 (PFZ59_03195) - 614037..616067 (+) 2031 WP_277697468.1 DUF1430 domain-containing protein -
  PFZ59_RS03200 (PFZ59_03200) - 616069..616710 (+) 642 WP_208582386.1 ABC transporter ATP-binding protein -
  PFZ59_RS03205 (PFZ59_03205) - 616703..617002 (+) 300 WP_208582387.1 hypothetical protein -
  PFZ59_RS03210 (PFZ59_03210) - 617042..617236 (-) 195 WP_029179700.1 hypothetical protein -
  PFZ59_RS03215 (PFZ59_03215) - 617365..617889 (+) 525 WP_024384267.1 membrane protein -

Sequence

Protein


Download         Length: 303 a.a.        Molecular weight: 35672.46 Da        Isoelectric Point: 4.7671

>NTDB_id=709845 PFZ59_RS03185 WP_208582383.1 612420..613331(+) (comR) [Streptococcus suis strain SS/UPM/MY/F001]
MDLGQKIEQLRLEKGLSRPDFCGDESELTVRQLARIESGQSQPSIPKLEYIAQRLGIPAYSLMPDYKELPQGYLELKYKL
LREPIYNKVEVLDKKELYLDEIEELYCEQLPPEESVWVETSRAILDVIRTQHPEYAVALLETYLPELEEKEVFSLKDLEL
ISLYFVSVFAHIKNKKNQLSEIGKLQLFLSRLIKHVNLVQPEQLFLLSNVIFSGLACLDMLESYEFFDLYIARLQEIMEK
TQDFQKKPILLMLHWKHALVVENKYSLAEGFYQKAKLFADMIEDTHLVTMLEKQWQEDLKKYL

Nucleotide


Download         Length: 912 bp        

>NTDB_id=709845 PFZ59_RS03185 WP_208582383.1 612420..613331(+) (comR) [Streptococcus suis strain SS/UPM/MY/F001]
ATGGATTTAGGACAAAAAATCGAGCAACTGAGGCTAGAAAAGGGACTGAGCCGCCCAGATTTTTGTGGAGATGAATCCGA
GTTGACGGTACGGCAATTAGCTCGGATAGAAAGTGGTCAATCGCAACCTTCTATTCCAAAGCTAGAGTACATTGCCCAGC
GTTTAGGCATTCCAGCCTATAGCCTGATGCCAGACTATAAGGAACTACCACAAGGTTATCTGGAACTCAAGTACAAGTTG
CTGCGGGAGCCGATATATAATAAGGTGGAGGTGTTGGATAAAAAGGAACTATACCTTGATGAAATAGAGGAACTATATTG
TGAACAATTACCACCAGAGGAATCGGTGTGGGTTGAAACGTCAAGAGCGATTCTGGATGTTATTCGTACACAACATCCGG
AGTATGCGGTAGCCTTATTAGAAACGTATTTACCTGAACTTGAGGAGAAAGAAGTCTTTTCGTTGAAGGATTTAGAACTG
ATTAGTCTGTATTTCGTCAGTGTATTTGCACATATAAAAAACAAGAAAAATCAGTTATCAGAAATTGGCAAGTTGCAATT
GTTCTTATCGCGTTTAATAAAGCATGTCAATCTTGTTCAGCCAGAGCAATTATTTCTTCTGAGTAATGTTATTTTTTCAG
GTCTGGCTTGTTTGGATATGCTGGAGTCTTATGAATTTTTTGACCTTTATATTGCTCGTCTTCAAGAAATAATGGAGAAA
ACACAGGATTTTCAAAAGAAACCTATTTTACTTATGTTGCACTGGAAACATGCTCTTGTTGTGGAGAATAAGTATAGTTT
GGCAGAAGGGTTCTATCAAAAAGCAAAACTATTTGCTGATATGATTGAAGATACGCATTTAGTAACCATGTTAGAAAAGC
AGTGGCAAGAAGATTTGAAAAAATATTTATAA

Domains

Predicted by InterProScan.

Helix-turn-helix (HTH_3)

(7-58)

ComR tetratricopeptide (ComR_TPR)

(70-295)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comR Streptococcus mutans UA159

40.604

98.35

0.399
  comR Streptococcus pyogenes MGAS8232

36.808

100

0.373
  comR Streptococcus pyogenes MGAS315

36.066

100

0.363