Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   NMT99_RS18230 Genome accession   NZ_CP101290
Coordinates   3515996..3516685 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis strain LjM2     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3510996..3521685
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMT99_RS18195 flgN 3511179..3511661 (-) 483 WP_014481048.1 flagellar protein FlgN -
  NMT99_RS18200 flgM 3511677..3511943 (-) 267 WP_014478128.1 flagellar biosynthesis anti-sigma factor FlgM -
  NMT99_RS18205 yvyF 3512024..3512440 (-) 417 WP_259597028.1 TIGR03826 family flagellar region protein -
  NMT99_RS18210 comFC 3512514..3513236 (-) 723 WP_029725992.1 comF operon protein ComFC Machinery gene
  NMT99_RS18215 comFB 3513200..3513496 (-) 297 WP_015483764.1 late competence protein ComFB -
  NMT99_RS18220 comFA 3513556..3514947 (-) 1392 WP_029725993.1 ATP-dependent helicase ComFA Machinery gene
  NMT99_RS18225 fakBA 3515053..3515898 (-) 846 WP_003227986.1 DegV family protein -
  NMT99_RS18230 degU 3515996..3516685 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  NMT99_RS18235 degS 3516768..3517925 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  NMT99_RS18240 yvyE 3518142..3518795 (+) 654 WP_003227979.1 YigZ family protein -
  NMT99_RS18245 tagV 3518795..3519970 (+) 1176 WP_003227977.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  NMT99_RS18250 tagO 3520043..3521119 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=709505 NMT99_RS18230 WP_003219701.1 3515996..3516685(-) (degU) [Bacillus subtilis strain LjM2]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=709505 NMT99_RS18230 WP_003219701.1 3515996..3516685(-) (degU) [Bacillus subtilis strain LjM2]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGAGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTTCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGTATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCAATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1