Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   PH604_RS02295 Genome accession   NZ_CP116342
Coordinates   447336..448001 (+) Length   221 a.a.
NCBI ID   WP_047918678.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain SE690.     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 442336..453001
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PH604_RS02270 (PH604_02260) cysT 442471..443298 (-) 828 WP_202838325.1 sulfate ABC transporter permease subunit CysT -
  PH604_RS02275 (PH604_02265) - 443479..443811 (+) 333 WP_047926879.1 hypothetical protein -
  PH604_RS02280 (PH604_02270) - 444138..444647 (+) 510 WP_003687909.1 isoprenylcysteine carboxyl methyltransferase family protein -
  PH604_RS02285 (PH604_02275) - 444877..445458 (-) 582 WP_033910016.1 superoxide dismutase -
  PH604_RS02290 (PH604_02280) dnaB 445622..447028 (+) 1407 WP_272656700.1 replicative DNA helicase -
  PH604_RS02295 (PH604_02285) pilH 447336..448001 (+) 666 WP_047918678.1 GspH/FimT family pseudopilin Machinery gene
  PH604_RS02300 (PH604_02290) pilV 448033..448644 (+) 612 WP_050164991.1 type IV pilus modification protein PilV Regulator
  PH604_RS02305 (PH604_02295) pilJ 448641..449573 (+) 933 WP_050164989.1 PilW family protein Machinery gene
  PH604_RS02310 (PH604_02300) pilK 449552..450163 (+) 612 WP_012503481.1 pilus assembly PilX family protein Machinery gene
  PH604_RS02315 (PH604_02305) pilL 450165..450638 (+) 474 WP_263315253.1 PilX family type IV pilin Machinery gene
  PH604_RS02320 (PH604_02310) - 450708..451016 (-) 309 WP_025456241.1 AzlD family protein -
  PH604_RS02325 (PH604_02315) - 451013..451722 (-) 710 Protein_456 AzlC family ABC transporter permease -
  PH604_RS02330 (PH604_02320) dut 451888..452340 (+) 453 WP_003687923.1 dUTP diphosphatase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 24613.96 Da        Isoelectric Point: 8.6140

>NTDB_id=709440 PH604_RS02295 WP_047918678.1 447336..448001(+) (pilH) [Neisseria gonorrhoeae strain SE690.]
MCTRKQQGFTLTELLIVMAIAAIMATIALPNMSGWIASRRIASHAEQIANLLRFSRGEAVRLNLPVYICPAQVKKDGTVD
NQCDFGKKEQGMLAFGDKNDNKAYDGDAADVFLRNVVLNDDIKDKRINYTFNHIAFGSSQPTADRVVWTFNQNGTFGYTK
DQHLASTSSFFYSDGYIQIVLTDARAVSDADRKFRSAVVLIDSSGRVEVCRKNDTRAVCKH

Nucleotide


Download         Length: 666 bp        

>NTDB_id=709440 PH604_RS02295 WP_047918678.1 447336..448001(+) (pilH) [Neisseria gonorrhoeae strain SE690.]
ATGTGTACACGAAAACAACAAGGTTTCACGCTAACAGAGCTGCTCATCGTGATGGCCATTGCAGCCATTATGGCGACGAT
AGCCCTCCCCAATATGAGTGGGTGGATTGCATCACGCCGCATTGCCAGTCACGCGGAGCAGATTGCCAACCTTTTGCGTT
TCTCCAGGGGCGAAGCCGTCCGGCTCAATCTCCCTGTCTATATCTGTCCTGCCCAAGTTAAAAAAGACGGTACGGTCGAC
AACCAATGCGACTTCGGTAAGAAGGAACAGGGGATGTTGGCTTTCGGCGACAAAAACGACAATAAGGCATATGACGGCGA
TGCTGCGGATGTTTTTCTCCGTAACGTGGTATTGAATGATGATATCAAGGATAAGCGGATTAATTACACCTTCAATCATA
TCGCTTTCGGTTCGTCTCAGCCGACCGCCGACCGTGTAGTTTGGACATTCAATCAAAACGGGACGTTCGGTTATACGAAA
GACCAGCATCTTGCAAGCACATCCAGCTTTTTTTATTCCGACGGTTATATCCAAATCGTGCTGACAGATGCGAGAGCAGT
TTCAGATGCCGATAGGAAATTCCGTTCGGCGGTGGTTTTGATTGACAGCAGCGGCAGGGTCGAAGTTTGTCGTAAAAACG
ATACGCGCGCCGTATGCAAACATTAA

Domains

Predicted by InterProScan.

Type II transport protein GspH (GspH)

(44-205)

Prokaryotic N-terminal methylation motif (N_methyl)

(4-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

86.878

100

0.869