Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Regulator
Locus tag   PH604_RS02300 Genome accession   NZ_CP116342
Coordinates   448033..448644 (+) Length   203 a.a.
NCBI ID   WP_050164991.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain SE690.     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 443033..453644
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PH604_RS02275 (PH604_02265) - 443479..443811 (+) 333 WP_047926879.1 hypothetical protein -
  PH604_RS02280 (PH604_02270) - 444138..444647 (+) 510 WP_003687909.1 isoprenylcysteine carboxyl methyltransferase family protein -
  PH604_RS02285 (PH604_02275) - 444877..445458 (-) 582 WP_033910016.1 superoxide dismutase -
  PH604_RS02290 (PH604_02280) dnaB 445622..447028 (+) 1407 WP_272656700.1 replicative DNA helicase -
  PH604_RS02295 (PH604_02285) pilH 447336..448001 (+) 666 WP_047918678.1 GspH/FimT family pseudopilin Machinery gene
  PH604_RS02300 (PH604_02290) pilV 448033..448644 (+) 612 WP_050164991.1 type IV pilus modification protein PilV Regulator
  PH604_RS02305 (PH604_02295) pilJ 448641..449573 (+) 933 WP_050164989.1 PilW family protein Machinery gene
  PH604_RS02310 (PH604_02300) pilK 449552..450163 (+) 612 WP_012503481.1 pilus assembly PilX family protein Machinery gene
  PH604_RS02315 (PH604_02305) pilL 450165..450638 (+) 474 WP_263315253.1 PilX family type IV pilin Machinery gene
  PH604_RS02320 (PH604_02310) - 450708..451016 (-) 309 WP_025456241.1 AzlD family protein -
  PH604_RS02325 (PH604_02315) - 451013..451722 (-) 710 Protein_456 AzlC family ABC transporter permease -
  PH604_RS02330 (PH604_02320) dut 451888..452340 (+) 453 WP_003687923.1 dUTP diphosphatase -
  PH604_RS02335 (PH604_02325) dapC 452418..453605 (+) 1188 WP_196427628.1 succinyldiaminopimelate transaminase -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 22133.26 Da        Isoelectric Point: 4.8582

>NTDB_id=709441 PH604_RS02300 WP_050164991.1 448033..448644(+) (pilV) [Neisseria gonorrhoeae strain SE690.]
MKNNDCLRLKNPQSGMALIEVLVAMLVLTIGILALLSVQLRTVASVREAETQTIVSQITQNLMEGMLMNPTIDLDSNKKN
YSLYMGKQTLSAVDGKFMLDAEKSKAQLAEEQLKRFSHELKNALPDAVAIRYAVCKDSSGDAPTLSDSGVFSPNCDNKAN
GDTLIKVLWVNDSAGDSDISRTNLEVSGDNIVYTYQARVGGRE

Nucleotide


Download         Length: 612 bp        

>NTDB_id=709441 PH604_RS02300 WP_050164991.1 448033..448644(+) (pilV) [Neisseria gonorrhoeae strain SE690.]
ATGAAGAATAATGATTGCTTGCGCCTGAAAAATCCCCAGTCCGGTATGGCGTTGATAGAAGTCTTGGTCGCTATGCTCGT
TCTGACCATCGGTATTTTGGCATTGCTGTCCGTACAGTTGCGGACGGTCGCTTCCGTCAGGGAGGCGGAAACGCAAACCA
TCGTCAGCCAAATCACGCAAAACCTGATGGAAGGAATGTTGATGAATCCGACCATTGATTTGGACAGCAACAAGAAAAAC
TATAGTCTTTACATGGGAAAACAGACACTATCAGCTGTGGATGGTAAGTTTATGCTTGATGCCGAGAAAAGTAAGGCGCA
GTTGGCAGAGGAACAATTGAAGAGATTTAGTCATGAGCTGAAAAATGCCTTGCCGGATGCGGTAGCTATTCGTTACGCCG
TCTGCAAGGATTCGTCGGGTGACGCGCCGACATTGTCCGACAGCGGTGTTTTTTCTCCAAATTGCGACAATAAGGCAAAC
GGGGATACTTTGATTAAAGTATTGTGGGTAAATGATTCGGCAGGGGATTCGGATATTTCCCGTACGAATCTTGAAGTGAG
CGGCGACAATATCGTATATACCTATCAGGCAAGGGTCGGAGGTCGTGAATGA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Neisseria meningitidis 8013

87.923

100

0.897
  pilV/pilI Neisseria gonorrhoeae MS11

83.744

100

0.837