Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   PH604_RS02310 Genome accession   NZ_CP116342
Coordinates   449552..450163 (+) Length   203 a.a.
NCBI ID   WP_012503481.1    Uniprot ID   B4RKG6
Organism   Neisseria gonorrhoeae strain SE690.     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 444552..455163
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PH604_RS02285 (PH604_02275) - 444877..445458 (-) 582 WP_033910016.1 superoxide dismutase -
  PH604_RS02290 (PH604_02280) dnaB 445622..447028 (+) 1407 WP_272656700.1 replicative DNA helicase -
  PH604_RS02295 (PH604_02285) pilH 447336..448001 (+) 666 WP_047918678.1 GspH/FimT family pseudopilin Machinery gene
  PH604_RS02300 (PH604_02290) pilV 448033..448644 (+) 612 WP_050164991.1 type IV pilus modification protein PilV Regulator
  PH604_RS02305 (PH604_02295) pilJ 448641..449573 (+) 933 WP_050164989.1 PilW family protein Machinery gene
  PH604_RS02310 (PH604_02300) pilK 449552..450163 (+) 612 WP_012503481.1 pilus assembly PilX family protein Machinery gene
  PH604_RS02315 (PH604_02305) pilL 450165..450638 (+) 474 WP_263315253.1 PilX family type IV pilin Machinery gene
  PH604_RS02320 (PH604_02310) - 450708..451016 (-) 309 WP_025456241.1 AzlD family protein -
  PH604_RS02325 (PH604_02315) - 451013..451722 (-) 710 Protein_456 AzlC family ABC transporter permease -
  PH604_RS02330 (PH604_02320) dut 451888..452340 (+) 453 WP_003687923.1 dUTP diphosphatase -
  PH604_RS02335 (PH604_02325) dapC 452418..453605 (+) 1188 WP_196427628.1 succinyldiaminopimelate transaminase -
  PH604_RS02340 (PH604_02330) yaaA 453761..454540 (+) 780 WP_272656701.1 peroxide stress protein YaaA -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 22021.91 Da        Isoelectric Point: 8.0862

>NTDB_id=709443 PH604_RS02310 WP_012503481.1 449552..450163(+) (pilK) [Neisseria gonorrhoeae strain SE690.]
MRKQNTLTGIPTSDGQRGSALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGEFQVLDLEYAA
DSKVTFSENCEKGLCTAVNVRTNDNGNEEAFGNIVVQGKPTVEAVKRSCPAKSGKNSTGLCIDNQGVEYKKGTGNVSKMP
RYIIEYLGVKNGQNVYRVTAKAWGKNANTVVVLQSYVGNNDEQ

Nucleotide


Download         Length: 612 bp        

>NTDB_id=709443 PH604_RS02310 WP_012503481.1 449552..450163(+) (pilK) [Neisseria gonorrhoeae strain SE690.]
ATGCGCAAACAGAACACTTTGACAGGAATCCCGACTTCTGACGGACAGAGGGGGTCCGCACTGTTTATCGTGCTGATGGT
GATGATAGTCGTGGCCTTTTTGGTTGTAACTGCCGCCCAGTCCTACAATACCGAACAGAGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTAGCCGAGGCGGCTTTGCGGGAGGGCGAATTTCAGGTTTTGGATTTGGAATATGCTGCG
GACAGTAAGGTTACGTTTAGCGAAAACTGTGAAAAAGGTCTGTGTACCGCAGTGAATGTGCGGACAAATGATAATGGTAA
TGAAGAGGCTTTTGGCAATATCGTGGTGCAAGGCAAGCCCACCGTTGAGGCGGTGAAGCGTTCTTGCCCTGCAAAGTCTG
GCAAAAATTCTACCGGCCTGTGCATTGACAATCAGGGAGTGGAATATAAGAAAGGTACGGGAAACGTCAGCAAAATGCCG
CGCTATATTATCGAATATTTAGGCGTGAAGAACGGACAAAATGTTTATCGGGTTACTGCCAAGGCTTGGGGTAAGAATGC
CAATACCGTGGTCGTCCTTCAATCTTATGTAGGCAATAATGATGAGCAATAA

Domains

Predicted by InterProScan.

PilX N-terminal (PilX_N)

(17-67)

Type IV pilus assembly protein PilX C-term (PilX)

(92-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B4RKG6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

96.059

100

0.961