Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE1/comEA   Type   Machinery gene
Locus tag   K6J61_RS08845 Genome accession   NZ_AP018769
Coordinates   1803256..1803603 (-) Length   115 a.a.
NCBI ID   WP_162686822.1    Uniprot ID   -
Organism   Haemophilus influenzae strain CHBN-II-6 isolate 12H01     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1798256..1808603
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6J61_RS08825 (CHBNII6_16870) bioB 1798645..1799646 (-) 1002 WP_110459347.1 biotin synthase BioB -
  K6J61_RS08830 (CHBNII6_16880) thiQ 1799759..1800406 (-) 648 WP_005647864.1 thiamine ABC transporter ATP-binding protein -
  K6J61_RS08835 (CHBNII6_16890) thiP 1800390..1802006 (-) 1617 WP_042594417.1 thiamine/thiamine pyrophosphate ABC transporter permease -
  K6J61_RS08840 (CHBNII6_16900) thiB 1802011..1803009 (-) 999 WP_005686289.1 thiamine ABC transporter substrate binding subunit -
  K6J61_RS08845 (CHBNII6_16910) comE1/comEA 1803256..1803603 (-) 348 WP_162686822.1 helix-hairpin-helix domain-containing protein Machinery gene
  K6J61_RS08850 (CHBNII6_16920) ispH 1803772..1804716 (-) 945 WP_005647895.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  K6J61_RS08855 (CHBNII6_16930) lspA 1804713..1805228 (-) 516 WP_042603649.1 signal peptidase II -
  K6J61_RS08860 (CHBNII6_16940) - 1805298..1806857 (-) 1560 WP_042601946.1 phosphoethanolamine transferase -

Sequence

Protein


Download         Length: 115 a.a.        Molecular weight: 12399.22 Da        Isoelectric Point: 8.0085

>NTDB_id=70911 K6J61_RS08845 WP_162686822.1 1803256..1803603(-) (comE1/comEA) [Haemophilus influenzae strain CHBN-II-6 isolate 12H01]
MKLMKTLFTSIVLCGALVVSSSFAEEKATEQTAQSVVTTQAEAQVAPAVVSDKLNINTATASEIQKSLTSIGAKKAEAIV
QYREKHGNFTNAEQLLEVQGIGKATLEKNRDRIIF

Nucleotide


Download         Length: 348 bp        

>NTDB_id=70911 K6J61_RS08845 WP_162686822.1 1803256..1803603(-) (comE1/comEA) [Haemophilus influenzae strain CHBN-II-6 isolate 12H01]
ATGAAATTAATGAAAACATTATTCACTTCGATTGTATTGTGTGGTGCACTGGTTGTTTCTTCGTCTTTTGCTGAGGAAAA
AGCGACAGAACAAACCGCTCAATCTGTTGTAACAACTCAAGCTGAAGCTCAAGTAGCACCAGCCGTAGTGAGCGATAAAT
TGAATATCAACACAGCAACTGCCAGTGAAATTCAAAAATCCCTAACTAGCATTGGTGCGAAAAAAGCGGAAGCTATTGTG
CAATATCGTGAAAAACACGGTAATTTTACTAATGCAGAACAGCTTTTAGAAGTACAAGGAATTGGCAAAGCAACACTAGA
GAAAAATCGTGATCGTATAATCTTTTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(52-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE1/comEA Haemophilus influenzae Rd KW20

96.429

97.391

0.939
  comEA/comE1 Glaesserella parasuis strain SC1401

57.391

100

0.574
  comEA Vibrio campbellii strain DS40M4

38.393

97.391

0.374

Multiple sequence alignment