Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   NL113_RS18155 Genome accession   NZ_CP101130
Coordinates   3635361..3635987 (+) Length   208 a.a.
NCBI ID   WP_040348230.1    Uniprot ID   -
Organism   Bacillus sp. KRF7     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3630361..3640987
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NL113_RS18120 aroE 3631005..3631841 (+) 837 WP_006637639.1 shikimate dehydrogenase -
  NL113_RS18125 yhbY 3631835..3632125 (+) 291 WP_006637638.1 ribosome assembly RNA-binding protein YhbY -
  NL113_RS18130 - 3632144..3632713 (+) 570 WP_006637637.1 nicotinate-nucleotide adenylyltransferase -
  NL113_RS18135 yqeK 3632703..3633266 (+) 564 WP_006637636.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  NL113_RS18140 rsfS 3633280..3633633 (+) 354 WP_006637635.1 ribosome silencing factor -
  NL113_RS18145 - 3633633..3634388 (+) 756 WP_006637634.1 class I SAM-dependent methyltransferase -
  NL113_RS18150 comER 3634456..3635277 (-) 822 WP_006637633.1 late competence protein ComER -
  NL113_RS18155 comEA 3635361..3635987 (+) 627 WP_040348230.1 helix-hairpin-helix domain-containing protein Machinery gene
  NL113_RS18160 - 3636055..3636624 (+) 570 WP_006637631.1 ComE operon protein 2 -
  NL113_RS18165 comEC 3636631..3638961 (+) 2331 WP_006637630.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  NL113_RS18170 - 3639052..3639183 (-) 132 WP_006637629.1 YqzM family protein -
  NL113_RS18175 holA 3639416..3640456 (+) 1041 WP_006637628.1 DNA polymerase III subunit delta -
  NL113_RS18180 rpsT 3640504..3640770 (-) 267 WP_006637627.1 30S ribosomal protein S20 -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 21819.76 Da        Isoelectric Point: 4.9695

>NTDB_id=708983 NL113_RS18155 WP_040348230.1 3635361..3635987(+) (comEA) [Bacillus sp. KRF7]
MVNSLKRYKWAAAGVFIAALSVISIMVMPKLHHESAGSDSLPADAASVQAADLAEKKESEEPDRIVVDLKGAVKKPGVYE
MKTGERVHQLLKKAGGTVKNAEGKQINLAAVLQDGMVIYIPFEGEETVQAGTGTAAPSSAEGGTETVNINTASPEELQAI
PGVGPSKAEAIAAYREENGPFQGIEDITNVSGIGEKTFEKIKSSISVK

Nucleotide


Download         Length: 627 bp        

>NTDB_id=708983 NL113_RS18155 WP_040348230.1 3635361..3635987(+) (comEA) [Bacillus sp. KRF7]
TTGGTGAATAGTCTGAAACGTTACAAATGGGCTGCGGCGGGAGTCTTTATTGCGGCGCTCTCTGTCATTTCGATCATGGT
AATGCCAAAACTCCACCATGAATCAGCCGGAAGCGACTCTTTGCCGGCTGATGCCGCATCCGTTCAAGCGGCCGATCTAG
CGGAGAAAAAGGAAAGCGAAGAACCGGACAGAATTGTCGTAGATCTGAAGGGGGCTGTTAAAAAACCGGGCGTTTATGAG
ATGAAGACGGGAGAAAGAGTGCACCAATTGCTGAAAAAAGCCGGGGGCACCGTGAAAAACGCAGAGGGAAAACAAATCAA
TCTGGCTGCTGTCCTTCAGGACGGCATGGTGATTTATATTCCGTTTGAAGGCGAAGAAACCGTTCAAGCCGGTACAGGAA
CGGCAGCACCATCAAGTGCTGAAGGCGGAACGGAAACGGTGAATATCAATACCGCTTCTCCCGAGGAGCTTCAAGCGATC
CCCGGCGTCGGACCTTCAAAAGCGGAGGCGATCGCCGCATACCGTGAAGAGAACGGCCCTTTTCAGGGGATTGAAGACAT
TACAAACGTATCAGGGATTGGCGAAAAAACGTTTGAGAAAATAAAATCGTCAATATCAGTAAAGTAA

Domains

Predicted by InterproScan.

SLBB domain (SLBB)

(66-121)

Helix-hairpin-helix motif (HHH_3)

(145-205)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Bacillus subtilis subsp. subtilis str. 168

52.607

100

0.534
  comEA Lactococcus lactis subsp. cremoris KW2

35.349

100

0.365