Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   PIC88_RS17560 Genome accession   NZ_CP116188
Coordinates   3599167..3599904 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain DETEC-E223     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3594167..3604904
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PIC88_RS17545 (PIC88_17540) clpC 3594621..3597194 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  PIC88_RS17550 (PIC88_17545) yfiH 3597324..3598055 (-) 732 WP_000040169.1 purine nucleoside phosphorylase YfiH -
  PIC88_RS17555 (PIC88_17550) rluD 3598052..3599032 (-) 981 WP_000079099.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  PIC88_RS17560 (PIC88_17555) comL 3599167..3599904 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  PIC88_RS17565 (PIC88_17560) raiA 3600175..3600516 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  PIC88_RS17570 (PIC88_17565) pheL 3600620..3600667 (+) 48 WP_010723158.1 phe operon leader peptide -
  PIC88_RS17575 (PIC88_17570) pheA 3600766..3601926 (+) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  PIC88_RS17580 (PIC88_17575) tyrA 3601969..3603090 (-) 1122 WP_000225229.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  PIC88_RS17585 (PIC88_17580) aroF 3603101..3604171 (-) 1071 WP_001168037.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  PIC88_RS17590 (PIC88_17585) yfiL 3604381..3604746 (+) 366 WP_000976004.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=708917 PIC88_RS17560 WP_000197686.1 3599167..3599904(+) (comL) [Escherichia coli strain DETEC-E223]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=708917 PIC88_RS17560 WP_000197686.1 3599167..3599904(+) (comL) [Escherichia coli strain DETEC-E223]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376