Detailed information NTG0708917

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: NK667_RS32210
• Genome accession: NZ_CP101125
• Coordinates: 7264821..7266161 (-)
• Length: 446 a.a.
• NCBI ID: WP_054616659.1
• Uniprot ID: -
• Organism: Pseudomonas nunensis strain In5
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 7259821..7271161

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NK667_RS32195 (NK667_32195)	-	7260015..7263122 (+)	3108	WP_054616662.1	pilus assembly protein	-
NK667_RS32200 (NK667_32200)	-	7263137..7263532 (+)	396	WP_054616661.1	type IV pilin protein	-
NK667_RS32205 (NK667_32205)	thiO	7263589..7264689 (+)	1101	WP_054616660.1	glycine oxidase ThiO	-
NK667_RS32210 (NK667_32210)	pilR	7264821..7266161 (-)	1341	WP_054616659.1	sigma-54-dependent transcriptional regulator	Regulator
NK667_RS32215 (NK667_32215)	pilS	7266164..7267753 (-)	1590	WP_054616658.1	sensor histidine kinase	Regulator
NK667_RS32220 (NK667_32220)	-	7267743..7267976 (-)	234	WP_054051339.1	PP0621 family protein	-
NK667_RS32225 (NK667_32225)	-	7268102..7269124 (-)	1023	WP_054051337.1	outer membrane protein assembly factor BamD	-
NK667_RS32230 (NK667_32230)	rluD	7269276..7270238 (+)	963	WP_054051336.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
NK667_RS32235 (NK667_32235)	pgeF	7270235..7270960 (+)	726	WP_054616657.1	peptidoglycan editing factor PgeF	-

Sequence

Protein

• Length: 446 a.a.
• Molecular weight: 49696.08 Da
• Isoelectric Point: 6.9066

>NTDB_id=708917 NK667_RS32210 WP_054616659.1 7264821..7266161(-) (pilR) [Pseudomonas nunensis strain In5]
MSPRQKVLIVDDEPDIRELLEITLGRMKLDTFSARNLGEAQALLGRETFDLCLTDMRLPDGTGLELVQHIQQRYPQVPVA
MITAYGSLETAINALKAGAFDFLTKPVDLTRLRELVTSALRLPAPGGASTAIDRRLLGESLPMRNLRKQIDKLARSQAPV
YISGESGSGKELVARLIHEQGPRAGRPFIPVNCGAIPSELMESEFFGHRKGSFSGAIEDNPGLFQAAHGGTLFLDEVADL
PLAMQVKLLRAIQEKAVRAVGGQQETVVDVRILCATHKDLDAEVSAERFRQDLYYRLNVIELRVPPLRERRDDIETLANH
VLKRLAAGTGYPAAKLHPQALEALKSYRFPGNVRELENMLERAHTLCENKQIEAGDLRLAEGNCAAEAGVPDLTRIDNLE
DYLENVERKLILQALEETRWNRTAAAQRLNLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1341 bp

>NTDB_id=708917 NK667_RS32210 WP_054616659.1 7264821..7266161(-) (pilR) [Pseudomonas nunensis strain In5]
ATGAGCCCACGGCAAAAAGTCCTGATCGTCGACGACGAACCGGATATCCGCGAACTCCTGGAAATCACCCTGGGACGGAT
GAAACTCGATACCTTCAGTGCCCGCAACCTTGGCGAAGCCCAGGCGCTGCTGGGCCGGGAAACATTCGATCTGTGCCTGA
CCGACATGCGCCTGCCCGACGGCACGGGCCTGGAACTGGTGCAACACATCCAGCAACGTTATCCCCAAGTGCCGGTGGCG
ATGATCACCGCTTACGGTAGCCTCGAAACCGCGATCAACGCCCTCAAGGCCGGTGCCTTTGACTTCCTGACCAAACCGGT
GGACCTCACCCGATTGCGGGAACTGGTCACCAGCGCCCTGCGTCTGCCTGCTCCGGGTGGCGCCAGCACCGCCATCGATC
GTCGGTTGCTGGGCGAATCATTGCCGATGCGCAACCTGCGTAAACAAATCGACAAACTGGCCCGCAGCCAGGCCCCGGTG
TACATCAGCGGCGAATCCGGCAGCGGCAAGGAGTTGGTCGCGCGCCTGATCCACGAACAAGGTCCACGGGCCGGCCGGCC
CTTTATCCCGGTCAACTGCGGGGCAATCCCGTCAGAACTGATGGAAAGCGAATTCTTCGGCCACCGCAAAGGCAGCTTCA
GTGGCGCCATTGAAGATAATCCCGGACTGTTCCAGGCGGCCCATGGCGGCACTCTGTTCCTCGACGAAGTGGCGGATTTG
CCGTTGGCGATGCAGGTCAAGCTGCTGCGGGCGATCCAGGAGAAAGCCGTGCGCGCCGTCGGCGGCCAGCAGGAAACCGT
GGTCGATGTACGTATCCTCTGCGCCACTCACAAAGACCTCGACGCCGAAGTCAGCGCCGAACGTTTTCGCCAGGATTTGT
ATTACCGTTTGAACGTGATCGAGTTGCGCGTCCCGCCCTTGCGCGAACGCCGGGACGACATCGAGACACTGGCCAACCAT
GTGCTCAAGCGCCTGGCCGCCGGCACCGGATATCCCGCCGCCAAACTGCATCCGCAAGCCCTTGAAGCACTGAAAAGCTA
CCGTTTCCCGGGCAATGTGCGGGAGCTGGAGAACATGCTCGAACGTGCTCACACCTTGTGCGAGAACAAACAGATCGAAG
CCGGGGACTTGCGCCTGGCCGAAGGCAACTGCGCCGCTGAAGCGGGTGTGCCAGACCTGACGCGGATCGACAATCTGGAA
GATTATCTGGAGAACGTCGAACGCAAACTGATCCTCCAGGCCCTGGAGGAAACCCGCTGGAACCGTACAGCGGCGGCGCA
GCGGTTGAATTTGTCGTTTCGTTCGATGCGCTACAGGCTGAAGAAATTAGGGTTGGATTGA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (7-116)

• Bacterial regulatory protein, Fis family (HTH_8) (403-443)

• Sigma-54 interaction domain (Sigma54_activat) (137-302)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	80.587	99.327	0.8
pilR	Acinetobacter baumannii strain A118	49.783	100	0.513