Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   NK667_RS32215 Genome accession   NZ_CP101125
Coordinates   7266164..7267753 (-) Length   529 a.a.
NCBI ID   WP_054616658.1    Uniprot ID   -
Organism   Pseudomonas nunensis strain In5     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 7261164..7272753
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NK667_RS32200 (NK667_32200) - 7263137..7263532 (+) 396 WP_054616661.1 type IV pilin protein -
  NK667_RS32205 (NK667_32205) thiO 7263589..7264689 (+) 1101 WP_054616660.1 glycine oxidase ThiO -
  NK667_RS32210 (NK667_32210) pilR 7264821..7266161 (-) 1341 WP_054616659.1 sigma-54-dependent transcriptional regulator Regulator
  NK667_RS32215 (NK667_32215) pilS 7266164..7267753 (-) 1590 WP_054616658.1 sensor histidine kinase Regulator
  NK667_RS32220 (NK667_32220) - 7267743..7267976 (-) 234 WP_054051339.1 PP0621 family protein -
  NK667_RS32225 (NK667_32225) - 7268102..7269124 (-) 1023 WP_054051337.1 outer membrane protein assembly factor BamD -
  NK667_RS32230 (NK667_32230) rluD 7269276..7270238 (+) 963 WP_054051336.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  NK667_RS32235 (NK667_32235) pgeF 7270235..7270960 (+) 726 WP_054616657.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58613.63 Da        Isoelectric Point: 7.0068

>NTDB_id=708918 NK667_RS32215 WP_054616658.1 7266164..7267753(-) (pilS) [Pseudomonas nunensis strain In5]
MIAEASSPGSKQAQRLLRLYHFYRLSVGITLVLLISSNMDNQLLTFANNDLLRSGSWLYLVLNILLVVFLENTRRPAQLF
SLTLVDVLLLCGLFYAAGGVASAIGNLLIVSVAIGNTLLRGRIGLLIAAVAALGIVGLSFLLSFTRPTSPSDYLQAGTLG
ALCFAAALLVQGLIRRLEVSEHLAEQRASEVVSLEALNALILQRMRTGILVLDEQRRVQLANHSALSLLGQERLEGQLID
EYSPILVERLQLWLNNPTLRPQSLKIARSGLELQPSFIALDQSPHHQTLIFLEDLAQIAQQAQQLKLAALGRLTAGIAHE
IRNPLGAVSHAAQLLLESEELNGADRRLTQIIQDHSQRMNRVIENVLQLSRRQQTAPQRLDLKPWLEQYVAETREAATEG
QQIHLRIGMGHFKTLMDPNQLTQILDNLLRNAWRHSSLIHETAEVWLELFVDADSQLPVLEVLDNGPGVAPDQQAHLFEP
FFTTSSQGTGLGLYLSRELCESNQARLDFKPRQGGGCFRITFAHGRKQS

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=708918 NK667_RS32215 WP_054616658.1 7266164..7267753(-) (pilS) [Pseudomonas nunensis strain In5]
GTGATCGCTGAGGCCTCCAGCCCCGGCAGCAAACAGGCCCAGCGACTGCTGCGCCTTTATCATTTTTACCGTTTAAGCGT
CGGTATCACCCTGGTGCTGTTGATCTCCAGCAACATGGACAACCAGTTGCTGACGTTCGCCAATAACGATCTGCTGCGCA
GTGGCAGCTGGTTGTACCTGGTGCTGAACATCCTGCTGGTGGTGTTCCTGGAGAACACCCGGCGCCCGGCGCAGTTGTTC
AGCCTGACGCTGGTCGACGTCTTGCTGCTGTGCGGCCTGTTCTATGCCGCCGGCGGTGTGGCCAGCGCCATTGGCAACTT
GCTGATTGTGTCGGTGGCCATCGGCAACACCCTGTTGCGCGGGCGTATCGGCCTGTTGATTGCGGCGGTCGCGGCCCTTG
GCATTGTCGGCTTGAGCTTCCTGCTCAGCTTCACCCGCCCCACCAGCCCCAGTGACTACCTGCAAGCCGGCACCCTCGGC
GCCCTGTGCTTTGCCGCCGCGTTGCTGGTGCAAGGTTTGATTCGACGCCTGGAAGTCAGCGAACACCTCGCCGAGCAGCG
CGCCAGTGAGGTCGTCAGCCTCGAAGCCCTCAACGCCCTGATCCTGCAGCGCATGCGCACCGGGATTCTGGTGCTCGATG
AGCAGCGGCGGGTACAACTGGCCAACCACAGCGCCCTGTCACTGCTGGGTCAGGAGCGCCTCGAAGGCCAGCTGATCGAT
GAATACTCGCCGATCCTGGTCGAGCGCCTGCAACTGTGGCTCAACAACCCGACCTTGCGCCCTCAGAGCTTGAAGATCGC
CCGCTCCGGCCTGGAACTGCAGCCGAGCTTCATCGCCCTGGACCAGAGCCCGCACCATCAGACCCTGATCTTTCTCGAAG
ACCTCGCCCAGATCGCCCAGCAGGCACAGCAATTGAAACTCGCTGCCCTGGGTCGCCTGACCGCCGGGATCGCCCACGAG
ATCCGTAATCCGCTGGGCGCCGTTAGTCATGCCGCGCAGTTGCTGCTGGAGTCCGAGGAACTGAACGGCGCGGATCGGCG
TCTGACCCAGATTATCCAAGACCACTCTCAGCGAATGAATCGGGTTATCGAAAACGTCCTGCAACTGTCCCGCCGCCAGC
AAACCGCACCGCAACGGCTCGATCTGAAGCCGTGGCTCGAGCAATACGTCGCTGAAACCCGCGAGGCCGCGACCGAAGGC
CAGCAAATTCACCTGCGCATCGGCATGGGCCACTTCAAAACGTTGATGGACCCGAATCAGCTGACGCAGATTCTCGACAA
TTTATTGCGCAATGCCTGGCGTCACAGCAGCTTGATCCATGAAACGGCCGAGGTCTGGCTGGAGCTGTTTGTCGACGCCG
ACAGCCAACTGCCAGTCCTCGAAGTACTGGACAACGGCCCCGGTGTGGCGCCGGACCAGCAGGCGCACTTGTTCGAACCC
TTCTTCACCACCAGTAGCCAGGGCACTGGCCTGGGGCTTTATCTGTCCCGTGAGCTGTGCGAAAGCAACCAGGCCCGCCT
AGACTTCAAACCACGCCAAGGCGGCGGCTGCTTTCGCATCACCTTTGCACACGGACGGAAACAAAGTTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-522)

His Kinase A (phospho-acceptor) domain (HisKA)

(309-374)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

59.245

100

0.594