Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   K6J61_RS00270 Genome accession   NZ_AP018769
Coordinates   57253..57972 (-) Length   239 a.a.
NCBI ID   WP_048942826.1    Uniprot ID   -
Organism   Haemophilus influenzae strain CHBN-II-6 isolate 12H01     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 52253..62972
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6J61_RS00250 (CHBNII6_00510) nrdR 52381..52830 (-) 450 WP_005648026.1 transcriptional regulator NrdR -
  K6J61_RS00255 (CHBNII6_00520) recC 52885..56247 (-) 3363 WP_048942829.1 exodeoxyribonuclease V subunit gamma -
  K6J61_RS00260 (CHBNII6_00530) comQ 56293..56580 (-) 288 WP_048942828.1 DUF5374 domain-containing protein Machinery gene
  K6J61_RS00265 (CHBNII6_00540) comP 56573..57256 (-) 684 WP_048942827.1 DUF2572 family protein Machinery gene
  K6J61_RS00270 (CHBNII6_00550) comO 57253..57972 (-) 720 WP_048942826.1 type II secretion system protein J Machinery gene
  K6J61_RS00275 (CHBNII6_00560) comN 57972..58484 (-) 513 WP_048942825.1 type II secretion system protein Machinery gene
  K6J61_RS00280 (CHBNII6_00570) suhB 58684..59487 (+) 804 WP_005664157.1 inositol-1-monophosphatase -
  K6J61_RS00285 (CHBNII6_00580) nrfE 59596..61503 (+) 1908 WP_042593717.1 heme lyase NrfEFG subunit NrfE -
  K6J61_RS00290 (CHBNII6_00590) - 61503..62033 (+) 531 WP_005688388.1 DsbE family thiol:disulfide interchange protein -

Sequence

Protein


Download         Length: 239 a.a.        Molecular weight: 26815.18 Da        Isoelectric Point: 9.5423

>NTDB_id=70881 K6J61_RS00270 WP_048942826.1 57253..57972(-) (comO) [Haemophilus influenzae strain CHBN-II-6 isolate 12H01]
MMKTLLKGQTLLALMISLALSSLLLLSISHFYVQIQTQNQHMLLHLKLQAELQRTLQLIGKDLRRLGFRALNAKLTESNL
SLFELDEQGTAIFISQEDNAPPNSCVLFFYDLNKNGCIGKGSPKTCMKKGKNTSKSSTEELFGYKVSNKMIKTKLTYQSV
IPTNCTAETCKRAFQQTACNAGGGWADLLDNNEYEITKLQFNWLIEGKGLEIKLKGNLKQAPNISYETSLVVALWNQKQ

Nucleotide


Download         Length: 720 bp        

>NTDB_id=70881 K6J61_RS00270 WP_048942826.1 57253..57972(-) (comO) [Haemophilus influenzae strain CHBN-II-6 isolate 12H01]
ATGATGAAAACATTATTAAAAGGGCAAACCCTATTAGCACTGATGATTTCACTGGCTTTGTCTTCTTTATTGCTGCTAAG
CATTTCGCATTTTTATGTGCAAATACAAACACAAAATCAACACATGCTATTGCATTTAAAATTACAAGCTGAATTACAAC
GAACATTACAGTTAATAGGTAAAGATCTTCGCCGATTAGGATTTCGAGCATTAAATGCAAAACTGACGGAAAGCAATTTA
TCTTTATTTGAATTAGATGAACAAGGCACAGCTATTTTTATTAGCCAAGAAGATAATGCGCCACCTAATAGCTGCGTGTT
GTTCTTTTATGATTTAAATAAAAATGGATGTATTGGTAAAGGTTCGCCGAAAACCTGTATGAAAAAAGGTAAAAATACAT
CTAAAAGTAGTACTGAAGAATTATTCGGCTATAAAGTGAGTAACAAAATGATAAAAACCAAACTGACTTATCAAAGTGTT
ATTCCTACTAATTGCACAGCAGAAACTTGTAAACGTGCTTTTCAACAAACCGCTTGCAACGCTGGGGGAGGTTGGGCAGA
TTTATTAGATAACAACGAATATGAAATCACTAAGCTACAATTTAATTGGTTAATCGAAGGAAAAGGATTAGAAATCAAGT
TAAAAGGAAATTTAAAACAAGCTCCAAATATTAGTTATGAAACATCCCTTGTCGTTGCTCTCTGGAATCAAAAACAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Haemophilus influenzae Rd KW20

97.899

99.582

0.975

Multiple sequence alignment