Detailed information    

insolico Bioinformatically predicted

Overview

Name   comN   Type   Machinery gene
Locus tag   K6J61_RS00275 Genome accession   NZ_AP018769
Coordinates   57972..58484 (-) Length   170 a.a.
NCBI ID   WP_048942825.1    Uniprot ID   -
Organism   Haemophilus influenzae strain CHBN-II-6 isolate 12H01     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 52972..63484
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6J61_RS00260 (CHBNII6_00530) comQ 56293..56580 (-) 288 WP_048942828.1 DUF5374 domain-containing protein Machinery gene
  K6J61_RS00265 (CHBNII6_00540) comP 56573..57256 (-) 684 WP_048942827.1 DUF2572 family protein Machinery gene
  K6J61_RS00270 (CHBNII6_00550) comO 57253..57972 (-) 720 WP_048942826.1 type II secretion system protein J Machinery gene
  K6J61_RS00275 (CHBNII6_00560) comN 57972..58484 (-) 513 WP_048942825.1 type II secretion system protein Machinery gene
  K6J61_RS00280 (CHBNII6_00570) suhB 58684..59487 (+) 804 WP_005664157.1 inositol-1-monophosphatase -
  K6J61_RS00285 (CHBNII6_00580) nrfE 59596..61503 (+) 1908 WP_042593717.1 heme lyase NrfEFG subunit NrfE -
  K6J61_RS00290 (CHBNII6_00590) - 61503..62033 (+) 531 WP_005688388.1 DsbE family thiol:disulfide interchange protein -
  K6J61_RS00295 (CHBNII6_00600) nrfF 62030..63172 (+) 1143 WP_005688390.1 heme lyase NrfEFG subunit NrfF -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 19839.06 Da        Isoelectric Point: 8.9743

>NTDB_id=70882 K6J61_RS00275 WP_048942825.1 57972..58484(-) (comN) [Haemophilus influenzae strain CHBN-II-6 isolate 12H01]
MQKGMTLVELLIGLAIISIALNFAVPLWKTDSPKTILAKEQHRLYLFLRQIQARAENSSEVWFLLINRNLATQQWCLTAQ
VKNNQTCDCLNPINCSKEVYAHFYYPYFPNKTMIQSHHIYPKEITRFDGIRNTIVTRCFILQAENERTLFLFFNVGSIRL
KTNQFDSACN

Nucleotide


Download         Length: 513 bp        

>NTDB_id=70882 K6J61_RS00275 WP_048942825.1 57972..58484(-) (comN) [Haemophilus influenzae strain CHBN-II-6 isolate 12H01]
ATGCAGAAAGGTATGACATTAGTGGAATTATTGATTGGGTTAGCCATTATCAGTATTGCGCTGAATTTTGCAGTACCATT
ATGGAAAACCGATTCGCCTAAAACGATTTTAGCCAAAGAGCAACATCGCCTGTATTTATTTCTACGACAAATTCAGGCTC
GGGCAGAAAATTCATCGGAAGTGTGGTTTTTACTTATCAATCGTAACCTTGCGACACAACAATGGTGCTTAACGGCACAA
GTAAAAAATAACCAAACTTGTGATTGTTTAAATCCGATAAATTGCTCGAAAGAGGTTTATGCGCATTTTTACTATCCTTA
TTTTCCTAATAAAACGATGATTCAAAGCCATCATATTTATCCAAAAGAAATCACGAGATTTGATGGCATTCGTAATACTA
TCGTTACTCGTTGCTTTATTTTGCAAGCAGAAAATGAACGTACGTTATTTTTATTTTTCAATGTTGGTAGTATTCGTTTA
AAAACCAATCAATTTGATAGTGCTTGTAATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-21)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comN Haemophilus influenzae Rd KW20

98.824

100

0.988

Multiple sequence alignment