Detailed information    

insolico Bioinformatically predicted

Overview

Name   comQ   Type   Machinery gene
Locus tag   K6J61_RS00260 Genome accession   NZ_AP018769
Coordinates   56293..56580 (-) Length   95 a.a.
NCBI ID   WP_048942828.1    Uniprot ID   -
Organism   Haemophilus influenzae strain CHBN-II-6 isolate 12H01     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 51293..61580
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6J61_RS00250 (CHBNII6_00510) nrdR 52381..52830 (-) 450 WP_005648026.1 transcriptional regulator NrdR -
  K6J61_RS00255 (CHBNII6_00520) recC 52885..56247 (-) 3363 WP_048942829.1 exodeoxyribonuclease V subunit gamma -
  K6J61_RS00260 (CHBNII6_00530) comQ 56293..56580 (-) 288 WP_048942828.1 DUF5374 domain-containing protein Machinery gene
  K6J61_RS00265 (CHBNII6_00540) comP 56573..57256 (-) 684 WP_048942827.1 DUF2572 family protein Machinery gene
  K6J61_RS00270 (CHBNII6_00550) comO 57253..57972 (-) 720 WP_048942826.1 type II secretion system protein J Machinery gene
  K6J61_RS00275 (CHBNII6_00560) comN 57972..58484 (-) 513 WP_048942825.1 type II secretion system protein Machinery gene
  K6J61_RS00280 (CHBNII6_00570) suhB 58684..59487 (+) 804 WP_005664157.1 inositol-1-monophosphatase -
  K6J61_RS00285 (CHBNII6_00580) nrfE 59596..61503 (+) 1908 WP_042593717.1 heme lyase NrfEFG subunit NrfE -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 11024.82 Da        Isoelectric Point: 8.5208

>NTDB_id=70879 K6J61_RS00260 WP_048942828.1 56293..56580(-) (comQ) [Haemophilus influenzae strain CHBN-II-6 isolate 12H01]
MNKGMSLITLLFSLALFSVLFLVFNQWTADQRKSAVKIYQDFQATQIAENQAQRQFLGLACEQLIQQNGLTFRIRCENEH
IIVRYPTSEILIKTQ

Nucleotide


Download         Length: 288 bp        

>NTDB_id=70879 K6J61_RS00260 WP_048942828.1 56293..56580(-) (comQ) [Haemophilus influenzae strain CHBN-II-6 isolate 12H01]
ATGAATAAAGGAATGTCTCTTATTACATTGTTATTTTCTTTAGCTTTATTTAGCGTTTTATTTCTTGTTTTTAATCAATG
GACGGCAGATCAGCGAAAAAGTGCGGTAAAAATTTATCAAGATTTTCAGGCAACACAAATTGCAGAGAATCAAGCTCAAC
GCCAATTTTTAGGGTTAGCTTGTGAACAATTGATACAACAAAATGGCTTAACTTTTCGTATTCGATGTGAAAATGAACAC
ATTATTGTGCGTTATCCTACGAGTGAAATTTTGATAAAAACTCAGTAA

Domains

Predicted by InterproScan.

Family of unknown function (DUF5374) (DUF5374)

(53-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ Haemophilus influenzae Rd KW20

91.579

100

0.916

Multiple sequence alignment