Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   NGC85_RS15600 Genome accession   NZ_CP101115
Coordinates   3295290..3296723 (+) Length   477 a.a.
NCBI ID   WP_005050831.1    Uniprot ID   N9FMD0
Organism   Acinetobacter sp. Z1     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3290290..3301723
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NGC85_RS15580 (NGC85_15580) - 3290820..3291593 (-) 774 WP_254732263.1 hypothetical protein -
  NGC85_RS15585 (NGC85_15585) pbpG 3291771..3292838 (-) 1068 WP_155757857.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  NGC85_RS15590 (NGC85_15590) - 3293050..3293685 (+) 636 WP_005050835.1 response regulator -
  NGC85_RS15595 (NGC85_15595) pilS 3293703..3295268 (+) 1566 WP_254732264.1 PAS domain-containing sensor histidine kinase Regulator
  NGC85_RS15600 (NGC85_15600) pilR 3295290..3296723 (+) 1434 WP_005050831.1 sigma-54 dependent transcriptional regulator Regulator
  NGC85_RS15605 (NGC85_15605) - 3296763..3297893 (-) 1131 WP_254805623.1 S41 family peptidase -
  NGC85_RS15610 (NGC85_15610) gpmI 3297993..3299537 (-) 1545 WP_254732265.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  NGC85_RS15615 (NGC85_15615) lptG 3299655..3300725 (-) 1071 WP_254732266.1 LPS export ABC transporter permease LptG -

Sequence

Protein


Download         Length: 477 a.a.        Molecular weight: 53532.42 Da        Isoelectric Point: 6.2455

>NTDB_id=708753 NGC85_RS15600 WP_005050831.1 3295290..3296723(+) (pilR) [Acinetobacter sp. Z1]
MATKQPLVLLVDDEEDLCLLMQMTLARMGIKTHLAYRVEQAKKFFTEFQYDACLTDLNLPDGNGLDLVKHVTQNYPNTPI
AVLTAYGNMDIAIAALKAGAFDFVSKPVNQTHLDQLIQKALNRPQPEQEAAETALENKLLIGRSAPIQQLRIALKKIARS
QAPVFITGESGTGKEVVANLVHRLSNRSEGPFIAINCGAIPTELMESELFGHKKGSFTGATQDKQGLILSAHGGSLFLDE
IAELPVSMQVKLLRAVQEKKIRPVGSDQEIDVDFRVISASHQDLELLVQQGRFRQDLFFRIHVMDIVLPPLRERGQDILL
LANHFIQRISQEWDLTAKSLSSRAEQFLLQQYFPGNVRELRNIIERAITLSDDDNIDLAHLQTAPLRAPIASPTNISFSN
QDETEQMQHSASPAMSSKKLPPEGLERYLENIEKEILLNALNLTHWNRTLAAKKLGMTFRSLRYRLKKFGLDTEDDE

Nucleotide


Download         Length: 1434 bp        

>NTDB_id=708753 NGC85_RS15600 WP_005050831.1 3295290..3296723(+) (pilR) [Acinetobacter sp. Z1]
ATGGCAACTAAACAACCTCTCGTTCTACTCGTAGACGATGAAGAAGACTTATGTCTTTTAATGCAAATGACGCTCGCACG
AATGGGTATCAAAACTCACCTTGCCTATAGAGTCGAGCAAGCAAAAAAATTCTTTACTGAGTTTCAATACGATGCTTGTT
TAACCGATTTAAATCTTCCTGATGGGAATGGTCTAGATTTAGTTAAACATGTGACTCAGAACTATCCTAATACTCCAATC
GCGGTACTCACTGCATATGGCAATATGGACATTGCAATTGCAGCACTGAAAGCGGGTGCATTTGATTTTGTGAGCAAACC
TGTTAATCAGACTCATTTAGATCAACTCATTCAAAAAGCCTTGAATCGACCTCAGCCAGAACAAGAGGCGGCTGAAACAG
CTTTAGAAAATAAACTATTGATTGGTCGTTCAGCACCGATTCAGCAATTAAGAATTGCATTAAAGAAAATTGCACGTTCT
CAGGCACCTGTTTTTATTACTGGTGAATCAGGAACAGGCAAAGAAGTCGTAGCCAACCTAGTGCATCGCTTAAGTAATCG
TAGCGAAGGTCCTTTTATTGCCATTAACTGTGGTGCTATTCCAACTGAATTGATGGAAAGTGAACTGTTTGGACATAAAA
AAGGAAGCTTTACAGGTGCGACTCAAGACAAGCAAGGCTTAATTCTTTCCGCGCATGGTGGCAGTTTATTTTTAGATGAA
ATTGCAGAATTACCTGTAAGTATGCAGGTGAAACTGCTTCGTGCCGTACAAGAAAAGAAAATTCGTCCTGTAGGCTCGGA
TCAAGAAATTGATGTTGATTTCCGTGTAATAAGTGCCAGCCATCAAGATCTTGAGTTATTGGTTCAACAAGGTCGCTTCA
GACAAGATTTATTCTTCCGTATTCATGTGATGGATATTGTGTTACCGCCTTTACGCGAACGTGGTCAAGATATTCTTTTG
TTGGCAAATCATTTTATTCAAAGAATTAGCCAAGAATGGGATTTAACGGCCAAATCATTGTCCTCACGTGCAGAACAATT
TTTATTGCAGCAGTATTTCCCTGGTAATGTGCGTGAATTACGCAATATTATTGAACGTGCAATCACTCTCAGTGATGATG
ACAATATTGATCTCGCACATTTACAAACTGCGCCGTTACGAGCTCCGATTGCATCGCCAACCAATATTTCATTTTCTAAT
CAAGATGAAACTGAGCAAATGCAACACTCTGCTAGTCCAGCCATGAGTTCTAAGAAGCTTCCACCAGAAGGTTTAGAGCG
CTATTTAGAGAATATTGAGAAAGAAATTCTTCTGAATGCACTCAACTTAACCCATTGGAATAGAACATTAGCTGCTAAAA
AATTAGGAATGACATTCCGATCTTTACGCTACCGTTTGAAAAAGTTTGGTTTAGATACAGAAGACGATGAATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-117)

Bacterial regulatory protein, Fis family (HTH_8)

(429-469)

Sigma-54 interaction domain (Sigma54_activat)

(140-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9FMD0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

83.229

100

0.832
  pilR Pseudomonas aeruginosa PAK

51.073

97.694

0.499