Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   NGC85_RS15595 Genome accession   NZ_CP101115
Coordinates   3293703..3295268 (+) Length   521 a.a.
NCBI ID   WP_254732264.1    Uniprot ID   -
Organism   Acinetobacter sp. Z1     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3288703..3300268
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NGC85_RS15575 (NGC85_15575) thrC 3289603..3290742 (+) 1140 WP_254732262.1 threonine synthase -
  NGC85_RS15580 (NGC85_15580) - 3290820..3291593 (-) 774 WP_254732263.1 hypothetical protein -
  NGC85_RS15585 (NGC85_15585) pbpG 3291771..3292838 (-) 1068 WP_155757857.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  NGC85_RS15590 (NGC85_15590) - 3293050..3293685 (+) 636 WP_005050835.1 response regulator -
  NGC85_RS15595 (NGC85_15595) pilS 3293703..3295268 (+) 1566 WP_254732264.1 PAS domain-containing sensor histidine kinase Regulator
  NGC85_RS15600 (NGC85_15600) pilR 3295290..3296723 (+) 1434 WP_005050831.1 sigma-54 dependent transcriptional regulator Regulator
  NGC85_RS15605 (NGC85_15605) - 3296763..3297893 (-) 1131 WP_254805623.1 S41 family peptidase -
  NGC85_RS15610 (NGC85_15610) gpmI 3297993..3299537 (-) 1545 WP_254732265.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -

Sequence

Protein


Download         Length: 521 a.a.        Molecular weight: 59201.13 Da        Isoelectric Point: 6.4404

>NTDB_id=708752 NGC85_RS15595 WP_254732264.1 3293703..3295268(+) (pilS) [Acinetobacter sp. Z1]
MLGKIASSVSQTVYRLGVWYSGYRLIISISLLLIYLLTAEQLSANYQYPFLYFYTLICYISINIFQLFLLKIVPLQVSKQ
LIFIFIIDVICLGLITFSAGGPNLQLSLLYVIIIFSSAILLNAHLSLIVTLFAVIMVVYQRFIGNFFDYNNLNHLGNSVL
LAFLFFVVYAIGRIAVQRFKILETLTFHQSIEIHQLQNINRYILEQIEDGYLVLDESNHIVLTNPAANTLLGIHLPISLE
KTPLIKLQPDLFELIRFSDLEDGEEFSFESQQSLYTVNVKVKHLIVPEQALVLLILKDAQKITQQVQQLKLAALGQLSAS
IAHEIRNPLAAIVQANELLKESDAHQQEMLSRMISKQSKRIDSIIQDTLGMAGNRPSEPQIISLVEFFESLLNEDLIDAK
QQIKLNLTDRINILFDEKQLRQVLINLIRNALRHNSAEAEYIEVNVDLKEGRTCIDVVDFGSGVAKRDISQLFKPFFSTE
IKGTGLGLYLSHTFCEANHAKLTYVERQQGACFRIECSKIH

Nucleotide


Download         Length: 1566 bp        

>NTDB_id=708752 NGC85_RS15595 WP_254732264.1 3293703..3295268(+) (pilS) [Acinetobacter sp. Z1]
ATGTTGGGAAAAATTGCTTCCTCAGTGTCTCAAACCGTTTATCGACTTGGCGTTTGGTATAGTGGCTATCGACTGATTAT
TTCGATCAGTCTTTTGCTGATTTACTTACTTACCGCAGAACAACTCAGTGCTAATTATCAGTATCCTTTTTTATATTTCT
ATACACTGATTTGCTATATTAGCATTAATATTTTTCAGTTATTCCTATTAAAAATTGTCCCACTTCAAGTAAGCAAACAA
CTCATTTTTATCTTTATTATTGATGTTATTTGTTTGGGCTTAATTACGTTTTCAGCGGGTGGACCAAATCTACAATTAAG
TCTGCTTTATGTCATTATTATTTTCTCTTCTGCCATCTTACTGAATGCTCATCTTTCACTGATTGTTACACTGTTTGCAG
TCATTATGGTGGTTTATCAGCGTTTTATAGGCAATTTTTTTGATTACAATAATTTAAATCATCTAGGCAATAGTGTCTTA
CTTGCTTTCTTGTTTTTCGTAGTTTATGCGATTGGACGAATTGCAGTACAACGTTTTAAAATTTTAGAAACACTCACATT
TCACCAATCAATTGAAATTCATCAGCTTCAAAATATTAATCGCTATATTCTTGAACAAATTGAAGATGGCTATTTAGTCT
TAGATGAAAGTAATCATATTGTTCTTACCAACCCAGCAGCAAATACCTTATTGGGTATTCATTTGCCTATTTCATTAGAA
AAAACACCACTGATCAAACTTCAACCCGATCTTTTTGAACTCATTCGCTTTAGTGATTTAGAAGATGGTGAAGAGTTTAG
CTTTGAGTCACAACAAAGCCTTTACACTGTAAACGTTAAGGTAAAACACCTAATTGTTCCTGAACAAGCACTTGTCTTAC
TAATTCTTAAAGATGCACAAAAAATAACTCAGCAGGTTCAACAGCTTAAACTGGCAGCCTTAGGACAATTATCAGCAAGT
ATCGCACATGAAATTCGCAACCCTTTAGCTGCCATTGTTCAAGCCAATGAGTTGTTAAAAGAAAGTGATGCACATCAACA
AGAAATGCTATCACGTATGATTAGCAAGCAATCTAAACGAATTGATAGTATCATCCAAGATACACTGGGAATGGCAGGTA
ACAGACCTTCTGAACCACAAATTATTTCCTTAGTAGAATTTTTTGAAAGCTTGTTAAACGAAGATTTAATCGATGCAAAA
CAACAAATAAAACTTAATCTCACGGATCGAATTAATATTTTATTTGATGAAAAACAACTTAGACAGGTTTTAATCAATTT
GATTCGTAATGCTTTACGGCATAACTCAGCAGAGGCTGAATACATCGAAGTGAATGTTGATTTAAAAGAAGGCCGAACCT
GTATTGATGTGGTCGATTTTGGTTCAGGTGTGGCAAAACGAGATATTTCTCAGCTATTCAAACCATTTTTTAGTACCGAA
ATTAAAGGAACTGGTTTAGGATTATATCTGTCTCATACATTTTGTGAGGCAAATCATGCAAAGCTTACGTATGTTGAGCG
ACAACAAGGGGCATGTTTCAGGATTGAATGCTCAAAAATTCATTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(416-516)

His Kinase A (phospho-acceptor) domain (HisKA)

(313-369)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

64.341

99.04

0.637