Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   NGC85_RS07060 Genome accession   NZ_CP101115
Coordinates   1524139..1524846 (-) Length   235 a.a.
NCBI ID   WP_005054388.1    Uniprot ID   N9FGC8
Organism   Acinetobacter sp. Z1     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1519139..1529846
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NGC85_RS07045 (NGC85_07045) - 1519786..1521369 (+) 1584 WP_254805342.1 urea amidolyase family protein -
  NGC85_RS07050 (NGC85_07050) - 1521362..1523089 (+) 1728 WP_254805343.1 biotin carboxylase N-terminal domain-containing protein -
  NGC85_RS07055 (NGC85_07055) - 1523158..1523934 (-) 777 WP_005062113.1 M48 family metallopeptidase -
  NGC85_RS07060 (NGC85_07060) crp 1524139..1524846 (-) 708 WP_005054388.1 cAMP-activated global transcriptional regulator CRP Regulator
  NGC85_RS07065 (NGC85_07065) - 1524994..1525416 (+) 423 WP_005054387.1 OsmC family protein -
  NGC85_RS07070 (NGC85_07070) - 1525483..1526283 (-) 801 WP_254805344.1 peptidoglycan DD-metalloendopeptidase family protein -
  NGC85_RS07075 (NGC85_07075) clpB 1526546..1529125 (+) 2580 WP_254805345.1 ATP-dependent chaperone ClpB -
  NGC85_RS07080 (NGC85_07080) - 1529291..1529710 (+) 420 WP_005054381.1 hypothetical protein -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 26584.20 Da        Isoelectric Point: 4.6726

>NTDB_id=708739 NGC85_RS07060 WP_005054388.1 1524139..1524846(-) (crp) [Acinetobacter sp. Z1]
MTSNFSQLSTDALSPGQLPESVKALLKRAHINRYPKRTAIVDAGTESKSLYLILKGSVSIILREDDEREIVVAYLNPGDF
FGEMGLFETNPQRTAEVRTRDVCEIAEITYDNFHELSKQYPDLSYAVFAQLVRRLKNTTRKVTDLAFIDVSGRIARCLID
LSAQPEAMILPNGRQIRITRQEIGRIVGCSREMVGRVLKTLEDQGMIQTDGKAILIFDTSLEENTFTEEEFDDEE

Nucleotide


Download         Length: 708 bp        

>NTDB_id=708739 NGC85_RS07060 WP_005054388.1 1524139..1524846(-) (crp) [Acinetobacter sp. Z1]
ATGACTTCAAATTTTTCACAACTTAGCACTGACGCTTTATCACCAGGCCAACTACCTGAATCAGTTAAAGCCTTGCTAAA
ACGTGCTCATATTAACAGATACCCTAAACGCACCGCGATTGTTGACGCTGGAACGGAATCAAAATCACTGTATTTAATAT
TAAAAGGTTCAGTGTCAATTATATTACGTGAAGATGACGAGCGTGAGATTGTTGTTGCCTACTTAAACCCAGGCGATTTC
TTTGGTGAAATGGGTCTTTTTGAAACCAATCCTCAACGAACTGCTGAAGTACGTACCCGTGATGTATGTGAAATAGCAGA
AATTACCTATGATAACTTCCATGAGTTAAGCAAACAGTATCCTGATCTAAGCTATGCTGTATTCGCTCAACTTGTGCGTC
GTTTGAAAAATACAACGCGTAAAGTGACAGATCTTGCTTTTATCGATGTTTCTGGTCGTATTGCACGCTGTTTAATTGAT
TTATCTGCTCAACCAGAGGCAATGATTTTACCTAATGGTCGTCAGATTCGTATTACACGTCAAGAAATTGGTCGTATCGT
AGGCTGTTCTCGTGAAATGGTTGGTCGTGTTCTTAAAACACTAGAAGATCAAGGCATGATTCAAACTGATGGTAAAGCGA
TTTTAATCTTCGATACTTCTTTAGAAGAAAACACATTTACTGAAGAAGAGTTTGATGACGAGGAATAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(33-120)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(152-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9FGC8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Acinetobacter baumannii D1279779

94.894

100

0.949
  crp Vibrio cholerae strain A1552

46.86

88.085

0.413
  crp Haemophilus influenzae Rd KW20

48.187

82.128

0.396