Detailed information NTG0708286

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: NMD13_RS19495
• Genome accession: NZ_CP101034
• Coordinates: 4174873..4177083 (-)
• Length: 736 a.a.
• NCBI ID: WP_370601695.1
• Uniprot ID: -
• Organism: Pseudomonas nitroreducens strain OT171
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4169873..4182083

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NMD13_RS19460 (NMD13_19365)	murB	4170233..4171252 (-)	1020	WP_370599776.1	UDP-N-acetylmuramate dehydrogenase	-
NMD13_RS19465 (NMD13_19370)	-	4171249..4171713 (-)	465	WP_370599777.1	low molecular weight protein-tyrosine-phosphatase	-
NMD13_RS19470 (NMD13_19375)	kdsB	4171713..4172477 (-)	765	WP_370599778.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
NMD13_RS19475 (NMD13_19380)	-	4172482..4172667 (-)	186	WP_009621404.1	Trm112 family protein	-
NMD13_RS19480 (NMD13_19385)	lpxK	4172722..4173720 (-)	999	WP_370599779.1	tetraacyldisaccharide 4'-kinase	-
NMD13_RS19485 (NMD13_19390)	-	4173720..4174169 (-)	450	WP_275611022.1	biopolymer transporter ExbD	-
NMD13_RS19490 (NMD13_19395)	exbB	4174166..4174801 (-)	636	WP_275611021.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
NMD13_RS19495 (NMD13_19400)	comA	4174873..4177083 (-)	2211	WP_370601695.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
NMD13_RS19500 (NMD13_19405)	-	4177248..4177778 (+)	531	WP_331319879.1	DUF2062 domain-containing protein	-
NMD13_RS19505 (NMD13_19410)	-	4177926..4179173 (-)	1248	WP_370599780.1	lipoprotein-releasing ABC transporter permease subunit	-
NMD13_RS19510 (NMD13_19415)	lolD	4179185..4179883 (-)	699	WP_275611017.1	lipoprotein-releasing ABC transporter ATP-binding protein LolD	-
NMD13_RS19515 (NMD13_19420)	-	4179876..4181129 (-)	1254	WP_275611016.1	lipoprotein-releasing ABC transporter permease subunit	-
NMD13_RS19520 (NMD13_19425)	-	4181254..4181829 (+)	576	WP_275611015.1	PilZ domain-containing protein	-

Sequence

Protein

• Length: 736 a.a.
• Molecular weight: 79124.78 Da
• Isoelectric Point: 9.1902

>NTDB_id=708286 NMD13_RS19495 WP_370601695.1 4174873..4177083(-) (comA) [Pseudomonas nitroreducens strain OT171]
MFALALGLLALRGLPVLPPAWALLLLAALGLPLLFTRGYLIGLFLLGFAWACQSAQWALDDRLAVALDGRTLWLEGRVEG
LPDRSGPSVRFMLADVSSPRAQVPGTLRLSWFGGPPVEGGERWRLAVKLKRPHGMANGAGFDYEAWLTAQRIGATGSVKD
GQRLQSASGPPAWREAWRQRLLAVDAHGRSGALAALVLGDASGLTTADWQVLQDTGTLHLMVISGSHISLLAGLLYALVA
GLARFGIWPPRLPWLPCACLLAALGAWAYSLMAGFDVPLQRACIMVSIVLLWRLRYRHGGLWTPLLGALLAVLLAEPLVV
LLPGFWLSYAAVALLIFGFSARLGRWTAWRTWLRAQWLMAIGLLPASIALGLPLSVSGVVANLIAVPWVEMLVVPLALLG
SLALGIPWLGEALLWVSGGLLELLFQLLGWMAALAPAWQPVAAPAWALLLAMLGALVLLAPSGVPLRALGLVMFLPVFWP
SIALPPPGVAEVRVLDVGQGLSVMIRTRSRAWLYDTGARNGDFDIGERVVVPTLRSLGIGHLDLLMLSHADNDHAGGALA
VKKSLRPAQVISGEPDRLSPELGAQPCRKQRWVIDGVNFESWAWDVGRESNDRSCVLQIEADGERLLLTGDLPQSGELAW
LAAHPDVRVDWLLAGHHGSRSSSGPAFVRAVSPSAAIISRGANNPYGHPHPSVVERFRALGIRIHDTAQEGALTLMLGAH
GELRGVREGAHFWQEK

Nucleotide

• Length: 2211 bp

>NTDB_id=708286 NMD13_RS19495 WP_370601695.1 4174873..4177083(-) (comA) [Pseudomonas nitroreducens strain OT171]
ATGTTCGCGCTGGCCCTCGGATTGCTGGCGCTGCGCGGGTTGCCGGTGCTTCCGCCCGCTTGGGCGCTGTTGCTCCTGGC
GGCACTGGGGTTGCCCTTGCTGTTCACCCGCGGCTATCTCATCGGCCTGTTCCTGCTGGGGTTCGCCTGGGCCTGCCAGT
CGGCCCAATGGGCGCTGGATGACCGGCTGGCCGTGGCGCTCGACGGCCGCACGCTGTGGCTGGAGGGCAGGGTAGAGGGG
CTGCCGGATCGCTCCGGGCCCTCGGTGCGCTTCATGCTTGCCGATGTCTCCAGCCCTCGTGCGCAGGTGCCAGGGACGCT
GCGTCTGTCCTGGTTCGGCGGCCCGCCGGTGGAAGGCGGCGAGCGTTGGCGACTGGCAGTGAAGCTCAAGCGCCCGCACG
GCATGGCCAACGGCGCTGGCTTCGACTACGAGGCCTGGCTCACCGCGCAGAGGATCGGCGCTACCGGCAGCGTGAAGGAC
GGGCAGCGATTGCAGTCGGCCAGCGGCCCTCCGGCCTGGCGTGAAGCCTGGCGGCAGCGCTTGCTGGCGGTGGATGCCCA
TGGCCGATCCGGTGCCCTGGCGGCGCTGGTGCTGGGGGATGCGTCCGGTCTGACCACGGCGGACTGGCAGGTGTTGCAGG
ACACCGGAACCCTGCACCTGATGGTGATTTCCGGCTCGCACATTTCCCTGCTGGCCGGTCTGCTCTATGCGCTGGTCGCC
GGGCTGGCGCGTTTCGGCATCTGGCCCCCACGCCTGCCCTGGCTCCCCTGCGCCTGCCTGCTGGCGGCACTCGGGGCCTG
GGCCTACAGCCTGATGGCGGGGTTCGATGTGCCGCTGCAGCGCGCCTGCATCATGGTCTCGATCGTCCTGCTGTGGCGCC
TGCGTTACCGCCATGGCGGCTTGTGGACGCCGCTGCTGGGTGCCTTGCTGGCGGTGCTGCTGGCCGAGCCGCTGGTGGTG
CTGTTGCCCGGCTTCTGGCTGTCCTATGCGGCGGTGGCGCTGCTGATCTTCGGTTTTTCCGCTCGACTGGGGCGCTGGAC
GGCCTGGAGAACCTGGCTGCGGGCACAGTGGCTGATGGCGATCGGGTTGCTGCCTGCGTCCATTGCGCTCGGCCTGCCGC
TGAGTGTTTCCGGGGTGGTCGCCAACCTGATCGCAGTGCCCTGGGTGGAAATGCTGGTGGTGCCCCTGGCTCTGCTGGGC
AGCCTGGCGTTGGGTATTCCCTGGCTGGGCGAGGCTTTGCTCTGGGTGTCAGGCGGGTTGCTGGAGCTGTTGTTCCAGCT
GCTGGGCTGGATGGCCGCCTTGGCGCCTGCCTGGCAGCCGGTCGCCGCTCCGGCCTGGGCGCTGCTGTTGGCGATGCTGG
GCGCGCTGGTACTGCTGGCGCCGTCCGGAGTGCCGCTGCGCGCGCTCGGGTTGGTGATGTTCCTGCCGGTGTTCTGGCCG
TCCATTGCTCTGCCGCCGCCCGGTGTGGCCGAGGTTCGGGTACTGGATGTGGGGCAGGGGCTTTCCGTGATGATCCGTAC
CCGCAGTCGGGCCTGGCTCTACGACACCGGTGCGCGCAATGGCGACTTCGATATCGGCGAGCGCGTCGTCGTACCGACGC
TGCGGAGCCTGGGAATCGGTCATCTCGACCTGCTGATGCTCAGCCATGCCGATAACGACCACGCCGGTGGCGCCCTGGCG
GTGAAGAAGTCGCTGCGGCCGGCGCAGGTGATCAGCGGCGAGCCGGATCGCCTGTCTCCCGAGTTGGGGGCTCAGCCTTG
CCGGAAGCAGCGCTGGGTCATCGATGGGGTGAACTTCGAGAGCTGGGCCTGGGATGTTGGCCGGGAAAGCAATGATCGCT
CCTGCGTTCTCCAGATCGAAGCCGACGGCGAACGCCTGCTGCTGACCGGCGACCTGCCGCAATCCGGTGAACTGGCCTGG
CTGGCCGCGCACCCGGATGTCCGAGTCGACTGGCTGCTGGCCGGTCACCACGGTAGCCGCAGTTCGTCCGGGCCAGCTTT
CGTACGGGCGGTGTCGCCATCCGCCGCGATTATTTCCCGCGGCGCCAACAACCCCTACGGCCATCCCCATCCTTCGGTCG
TCGAGCGCTTCCGTGCACTCGGCATCCGGATTCACGATACGGCCCAGGAAGGCGCGTTGACGCTGATGCTCGGTGCCCAT
GGCGAGCTCCGGGGAGTGCGGGAAGGTGCACATTTCTGGCAGGAAAAATGA

Domains

Predicted by InterproScan.

• Domain of unknown function (DUF4131) (DUF4131) (19-163)

• Metallo-beta-lactamase superfamily (Lactamase_B) (496-678)

• Competence protein (Competence) (196-459)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	59.161	97.147	0.575
comA	Ralstonia pseudosolanacearum GMI1000	34.777	100	0.382