Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   NMD13_RS19490 Genome accession   NZ_CP101034
Coordinates   4174166..4174801 (-) Length   211 a.a.
NCBI ID   WP_275611021.1    Uniprot ID   -
Organism   Pseudomonas nitroreducens strain OT171     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4169166..4179801
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMD13_RS19460 (NMD13_19365) murB 4170233..4171252 (-) 1020 WP_370599776.1 UDP-N-acetylmuramate dehydrogenase -
  NMD13_RS19465 (NMD13_19370) - 4171249..4171713 (-) 465 WP_370599777.1 low molecular weight protein-tyrosine-phosphatase -
  NMD13_RS19470 (NMD13_19375) kdsB 4171713..4172477 (-) 765 WP_370599778.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  NMD13_RS19475 (NMD13_19380) - 4172482..4172667 (-) 186 WP_009621404.1 Trm112 family protein -
  NMD13_RS19480 (NMD13_19385) lpxK 4172722..4173720 (-) 999 WP_370599779.1 tetraacyldisaccharide 4'-kinase -
  NMD13_RS19485 (NMD13_19390) - 4173720..4174169 (-) 450 WP_275611022.1 biopolymer transporter ExbD -
  NMD13_RS19490 (NMD13_19395) exbB 4174166..4174801 (-) 636 WP_275611021.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  NMD13_RS19495 (NMD13_19400) comA 4174873..4177083 (-) 2211 WP_370601695.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  NMD13_RS19500 (NMD13_19405) - 4177248..4177778 (+) 531 WP_331319879.1 DUF2062 domain-containing protein -
  NMD13_RS19505 (NMD13_19410) - 4177926..4179173 (-) 1248 WP_370599780.1 lipoprotein-releasing ABC transporter permease subunit -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22973.25 Da        Isoelectric Point: 7.2806

>NTDB_id=708285 NMD13_RS19490 WP_275611021.1 4174166..4174801(-) (exbB) [Pseudomonas nitroreducens strain OT171]
MWELVKAGGWMMLPIMLSSVAAMAIIAERLWTLRLSRVAPPQLLGQVWKQIKDKKMNSQALKDLRASSPLGEILAAGLAN
SKHGREIMKECIEEAASRVIHELERYLNALGTIAAMAPLLGLLGTVFGMIQIFSAFMGDGMANAPMLAGGISKALITTAS
GLIVAIPAVFFHRYLLRRVDELVIAMEQEAIKLVEVTQGDREVDFAEEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=708285 NMD13_RS19490 WP_275611021.1 4174166..4174801(-) (exbB) [Pseudomonas nitroreducens strain OT171]
GTGTGGGAACTGGTCAAAGCTGGCGGCTGGATGATGCTGCCGATCATGCTGAGCTCCGTCGCTGCCATGGCGATCATCGC
CGAACGTCTCTGGACCCTGCGCTTGAGTCGCGTGGCCCCGCCGCAACTGCTCGGCCAGGTATGGAAGCAGATCAAGGACA
AGAAGATGAACAGCCAGGCCCTGAAGGACCTGCGCGCATCGTCCCCGCTGGGTGAAATCCTGGCCGCCGGCCTGGCCAAC
TCCAAGCACGGTCGCGAGATCATGAAGGAGTGCATCGAGGAAGCCGCATCCCGCGTCATCCATGAACTCGAGCGCTACCT
CAATGCGCTGGGCACCATCGCCGCCATGGCCCCGCTGCTCGGCCTGCTGGGTACCGTGTTCGGCATGATCCAGATCTTCA
GCGCCTTCATGGGCGACGGCATGGCCAACGCGCCGATGCTCGCCGGCGGTATCTCCAAGGCCCTGATCACCACCGCTTCG
GGCTTGATCGTGGCGATTCCGGCGGTGTTCTTCCATCGCTACCTGCTGCGCCGCGTCGATGAACTGGTCATCGCCATGGA
GCAGGAAGCCATCAAGCTGGTGGAAGTGACCCAGGGCGATCGCGAAGTCGATTTCGCCGAGGAAGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.043

100

0.81