Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   NMD13_RS04755 Genome accession   NZ_CP101034
Coordinates   995474..996814 (-) Length   446 a.a.
NCBI ID   WP_275610251.1    Uniprot ID   -
Organism   Pseudomonas nitroreducens strain OT171     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 990474..1001814
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMD13_RS04725 (NMD13_04710) - 990980..991606 (-) 627 WP_331318230.1 PilX N-terminal domain-containing pilus assembly protein -
  NMD13_RS04730 (NMD13_04715) - 991603..992451 (-) 849 WP_331318228.1 PilW family protein -
  NMD13_RS04735 (NMD13_04720) pilV 992448..993008 (-) 561 WP_275610247.1 type IV pilus modification protein PilV -
  NMD13_RS04740 (NMD13_04725) - 993017..993499 (-) 483 WP_370600723.1 GspH/FimT family pseudopilin -
  NMD13_RS04745 (NMD13_04730) - 993650..994162 (-) 513 WP_370600724.1 GspH/FimT family pseudopilin -
  NMD13_RS04750 (NMD13_04735) thiO 994352..995461 (+) 1110 WP_370600725.1 glycine oxidase ThiO -
  NMD13_RS04755 (NMD13_04740) pilR 995474..996814 (-) 1341 WP_275610251.1 sigma-54 dependent transcriptional regulator Regulator
  NMD13_RS04760 (NMD13_04745) pilS 996830..998419 (-) 1590 WP_275610252.1 ATP-binding protein Regulator
  NMD13_RS04765 (NMD13_04750) - 998409..998645 (-) 237 WP_207888483.1 PP0621 family protein -
  NMD13_RS04770 (NMD13_04755) - 998784..999809 (-) 1026 WP_370600726.1 outer membrane protein assembly factor BamD -
  NMD13_RS04775 (NMD13_04760) rluD 999959..1000918 (+) 960 WP_370600727.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  NMD13_RS04780 (NMD13_04765) pgeF 1000915..1001640 (+) 726 WP_370600728.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 49832.07 Da        Isoelectric Point: 5.6471

>NTDB_id=708270 NMD13_RS04755 WP_275610251.1 995474..996814(-) (pilR) [Pseudomonas nitroreducens strain OT171]
MSRQKALIVDDEPDIRELLEITLGRMKLDTRSARNVKEAREFLAREPFDFCLTDMRLPDGTGLDLVQYIQQRHPQTPVAM
ITAFGSLDTAVQALKAGAFDFLTKPVDLGRLRELVSTALRLRFPDAEEAPVDNRLLGDSPPMRQMRNQIAKLARSQAPVY
ISGESGSGKELVARLIHEQGPRANIAFVPVNCGAIPSELMESEFFGHKKGSFTGAVEDKQGLFQAANGGTLFLDEVADLP
LPMQVKLLRAIQEKAVRAVGGQQENSVDVRVLCATHKDLAAEVAAGRFRQDLYYRLNVIELRVPPLRERREDIPLLTERV
LQRLAGDAGLPVATVSPDALEKLKSYRFPGNVRELENMLERAYTLCENDVIQPQDLRLAETSTGGDNGGQASLAQIDNLE
DYLEEIERKLIMQALEETRWNRTAAAQRLGLTFRSMRYRLKKLGID

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=708270 NMD13_RS04755 WP_275610251.1 995474..996814(-) (pilR) [Pseudomonas nitroreducens strain OT171]
ATGAGTCGTCAAAAAGCCCTGATCGTCGATGACGAACCCGATATCCGCGAGCTGCTGGAGATCACCCTCGGCCGCATGAA
GCTGGATACCCGCAGCGCCCGTAACGTCAAGGAAGCGCGCGAATTCCTGGCCCGCGAGCCGTTCGACTTCTGCCTCACCG
ACATGCGCCTGCCCGACGGCACCGGGCTGGATCTGGTGCAGTACATCCAGCAGCGCCATCCGCAAACCCCGGTGGCGATG
ATCACCGCCTTCGGCAGCCTGGACACCGCCGTGCAGGCACTCAAGGCCGGCGCCTTTGACTTCCTCACCAAGCCGGTCGA
CCTGGGACGACTGCGCGAGCTGGTCAGCACGGCGCTGCGCCTGCGCTTCCCCGATGCCGAAGAGGCACCGGTGGACAACC
GACTGCTGGGCGACTCCCCCCCTATGCGGCAGATGCGCAACCAGATCGCCAAGCTGGCGCGCAGCCAGGCACCGGTCTAC
ATCAGCGGCGAATCCGGCAGCGGCAAGGAACTGGTCGCCCGACTGATCCATGAACAGGGCCCGCGCGCCAATATCGCCTT
CGTCCCGGTGAACTGCGGCGCGATTCCTTCGGAGCTGATGGAAAGCGAATTCTTCGGCCACAAGAAAGGTAGCTTCACCG
GCGCCGTGGAGGACAAGCAGGGGCTGTTCCAGGCCGCCAACGGCGGCACCCTGTTCCTCGACGAGGTTGCCGACCTGCCC
CTGCCCATGCAGGTCAAACTGCTGCGGGCGATCCAGGAGAAGGCCGTGCGCGCCGTCGGCGGCCAACAGGAAAACTCAGT
GGACGTGCGCGTCCTCTGTGCAACCCACAAGGACCTCGCGGCGGAAGTCGCCGCCGGCCGTTTCCGCCAGGACCTCTACT
ACCGCCTGAACGTCATCGAACTGCGCGTGCCGCCGTTGCGCGAGCGCCGCGAGGACATTCCGCTGCTCACCGAACGCGTA
CTCCAGCGCCTGGCCGGCGATGCCGGGCTGCCCGTGGCGACAGTCAGCCCGGACGCCTTGGAGAAGCTCAAGAGCTACCG
CTTCCCCGGCAACGTGCGCGAACTGGAGAACATGCTCGAGCGCGCCTACACACTGTGCGAGAACGATGTGATCCAGCCGC
AGGACCTGCGCCTGGCCGAAACCAGCACCGGTGGCGACAATGGCGGGCAGGCCAGTCTCGCGCAGATCGACAACCTCGAG
GACTACCTGGAGGAGATCGAGCGCAAGCTGATCATGCAGGCCCTCGAAGAGACCCGCTGGAACCGCACCGCAGCAGCGCA
GCGACTCGGGCTCACCTTCCGCTCGATGCGTTATCGGTTGAAGAAGCTGGGGATCGACTGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(136-301)

Bacterial regulatory protein, Fis family (HTH_8)

(403-443)

Response regulator receiver domain (Response_reg)

(7-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

88.789

100

0.888
  pilR Acinetobacter baumannii strain A118

49.565

100

0.511