Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   NMD13_RS04760 Genome accession   NZ_CP101034
Coordinates   996830..998419 (-) Length   529 a.a.
NCBI ID   WP_275610252.1    Uniprot ID   -
Organism   Pseudomonas nitroreducens strain OT171     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 991830..1003419
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMD13_RS04735 (NMD13_04720) pilV 992448..993008 (-) 561 WP_275610247.1 type IV pilus modification protein PilV -
  NMD13_RS04740 (NMD13_04725) - 993017..993499 (-) 483 WP_370600723.1 GspH/FimT family pseudopilin -
  NMD13_RS04745 (NMD13_04730) - 993650..994162 (-) 513 WP_370600724.1 GspH/FimT family pseudopilin -
  NMD13_RS04750 (NMD13_04735) thiO 994352..995461 (+) 1110 WP_370600725.1 glycine oxidase ThiO -
  NMD13_RS04755 (NMD13_04740) pilR 995474..996814 (-) 1341 WP_275610251.1 sigma-54 dependent transcriptional regulator Regulator
  NMD13_RS04760 (NMD13_04745) pilS 996830..998419 (-) 1590 WP_275610252.1 ATP-binding protein Regulator
  NMD13_RS04765 (NMD13_04750) - 998409..998645 (-) 237 WP_207888483.1 PP0621 family protein -
  NMD13_RS04770 (NMD13_04755) - 998784..999809 (-) 1026 WP_370600726.1 outer membrane protein assembly factor BamD -
  NMD13_RS04775 (NMD13_04760) rluD 999959..1000918 (+) 960 WP_370600727.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  NMD13_RS04780 (NMD13_04765) pgeF 1000915..1001640 (+) 726 WP_370600728.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58709.90 Da        Isoelectric Point: 7.3615

>NTDB_id=708271 NMD13_RS04760 WP_275610252.1 996830..998419(-) (pilS) [Pseudomonas nitroreducens strain OT171]
MATEGISLTGQGRRVLRLYHLYRLTIGLVLVLLISSNLDGEVLKLAHTELFHIGCWTYLVVNILIAVLMPAPRHLMPLFI
LAALDVLMLSGLFYTAGGVPSGIGTLMVIAVAIANILLRGRIGLLIAALASIGLIYLTFYISLTQEIAFNHYVQAGGLGA
LCFASALLIQALARRQQVIENLAEQRAATVANLEELNALILQRMRTGILVLDDQQRVLLANQSATTLLGGQELTGQPLAE
HSPALLNSLRLWQQNPALRPPSLQPHDTAPSVQPAFIPLHRGNEQHTLMFLEDISQIAQQAQQLKLASLGRLTAGIAHEI
RNPLGAISHAAQLLLESEELDPPDRRLTQIIQDQSRRMNLVIENVLQLSRRRQAEPQALDLKYWLQRFVDEQREGLRENQ
QLHVETGPGAVQTRMDPHQLTQVLTNLVQNGLRYSAKKNGTGQVWLRLFRDSETDLPILEVLDDGQGIAAEQRGRLFEPF
FTTESKGTGLGLYISRELCESNQARLDYKTRDEGGSCFRLTFAHPRKQS

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=708271 NMD13_RS04760 WP_275610252.1 996830..998419(-) (pilS) [Pseudomonas nitroreducens strain OT171]
GTGGCCACTGAAGGCATTTCGCTCACCGGGCAGGGACGGCGCGTCCTGCGCCTGTATCACCTGTACCGCCTGACCATCGG
TCTGGTCCTGGTACTGCTGATTTCCAGCAACCTTGACGGCGAAGTCCTCAAGCTCGCCCACACCGAACTGTTCCACATCG
GCTGCTGGACCTACCTGGTGGTGAACATCCTGATCGCCGTCCTGATGCCGGCGCCCCGGCATCTGATGCCGCTGTTCATC
CTGGCGGCACTCGACGTGCTGATGCTCAGCGGGCTGTTCTACACCGCCGGCGGCGTCCCCAGCGGTATCGGCACGCTGAT
GGTGATCGCCGTCGCCATCGCCAACATCCTGCTGCGCGGCCGGATAGGCCTTTTGATCGCCGCATTGGCGTCCATCGGGC
TGATCTACCTGACCTTCTACATCAGCCTTACCCAGGAGATCGCCTTCAACCACTATGTACAGGCCGGCGGGCTGGGCGCC
CTGTGCTTCGCCTCGGCGCTGCTGATCCAGGCGCTGGCGCGCCGCCAACAGGTCATCGAAAACCTCGCGGAACAACGGGC
CGCCACGGTAGCCAACCTCGAAGAACTCAACGCCCTGATCCTCCAGCGCATGCGTACCGGCATCCTTGTGCTGGACGATC
AGCAGCGCGTGCTGCTGGCCAACCAGAGCGCCACCACACTGCTCGGCGGACAGGAACTGACAGGGCAGCCGCTGGCCGAG
CACAGCCCGGCGCTGCTCAACAGCCTGCGGCTGTGGCAGCAGAACCCCGCCCTGCGGCCCCCCAGCCTGCAACCACACGA
CACCGCGCCCAGCGTGCAGCCTGCCTTCATCCCCCTGCACCGCGGCAATGAACAGCACACCCTGATGTTCCTCGAGGACA
TCTCGCAGATCGCCCAGCAGGCTCAGCAGCTCAAGCTCGCCTCGCTCGGCCGCCTGACCGCCGGCATCGCCCATGAGATC
CGCAACCCCCTGGGCGCCATCAGCCACGCCGCGCAATTGCTGCTGGAGTCCGAAGAGCTCGATCCGCCGGATCGACGACT
GACACAGATCATCCAGGACCAGTCGCGGCGGATGAACCTGGTGATCGAGAACGTGCTACAGCTTTCCCGCCGACGCCAGG
CGGAACCCCAAGCGCTCGACCTGAAATACTGGCTGCAACGTTTCGTCGACGAACAGCGTGAGGGGCTGCGCGAAAACCAG
CAGCTGCATGTCGAAACCGGGCCCGGCGCTGTGCAGACGCGCATGGACCCGCATCAGCTGACGCAGGTGCTGACCAATCT
GGTCCAGAATGGGTTACGGTACAGCGCCAAGAAAAACGGCACTGGCCAGGTGTGGTTGCGCCTGTTCCGCGACAGCGAAA
CCGACCTGCCGATCCTGGAAGTCCTCGACGATGGCCAGGGCATTGCTGCGGAGCAGCGGGGGAGGCTGTTCGAGCCGTTC
TTCACCACCGAAAGCAAGGGCACAGGTCTTGGGCTGTACATCTCCCGGGAGCTCTGTGAAAGCAACCAGGCGCGCCTGGA
CTATAAAACGCGTGACGAGGGTGGCAGTTGCTTCCGCCTCACCTTCGCCCATCCACGCAAACAAAGCTAA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(308-372)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(416-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

72.254

98.11

0.709