Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   NMD24_RS14855 Genome accession   NZ_CP101014
Coordinates   2987230..2987859 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain ET5     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2982230..2992859
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMD24_RS14840 (NMD24_14765) helD 2982473..2984526 (-) 2054 Protein_2908 DNA helicase IV -
  NMD24_RS14845 (NMD24_14770) yccF 2984649..2985095 (+) 447 WP_063078988.1 YccF domain-containing protein -
  NMD24_RS14850 (NMD24_14775) yccS 2985105..2987267 (+) 2163 WP_000875061.1 YccS family putative transporter -
  NMD24_RS14855 (NMD24_14780) sxy/tfoX 2987230..2987859 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  NMD24_RS14860 (NMD24_14785) sulA 2988078..2988587 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  NMD24_RS14865 (NMD24_14790) ompA 2988944..2989984 (+) 1041 WP_024201506.1 porin OmpA -
  NMD24_RS14870 (NMD24_14795) matP 2990060..2990512 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  NMD24_RS14875 (NMD24_14800) ycbZ 2990698..2992458 (+) 1761 WP_000156518.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=708138 NMD24_RS14855 WP_000839153.1 2987230..2987859(-) (sxy/tfoX) [Escherichia coli strain ET5]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=708138 NMD24_RS14855 WP_000839153.1 2987230..2987859(-) (sxy/tfoX) [Escherichia coli strain ET5]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1