Detailed information
Bioinformatically predicted
Overview
| Name | scnR | Type | Regulator |
| Locus tag | H7679_RS08440 | Genome accession | NZ_AP023392 |
| Coordinates | 1717068..1717718 (-) | Length | 216 a.a. |
| NCBI ID | WP_024395987.1 | Uniprot ID | - |
| Organism | Streptococcus suis strain DAT300 | ||
| Function | regulate comX expression (predicted from homology) Competence regulation |
||
Genomic Context
Location: 1712068..1722718
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H7679_RS08420 (DAT300_16340) | xseA | 1712109..1713452 (-) | 1344 | WP_044674153.1 | exodeoxyribonuclease VII large subunit | - |
| H7679_RS08425 (DAT300_16350) | - | 1713619..1714527 (+) | 909 | WP_024395989.1 | neutral zinc metallopeptidase | - |
| H7679_RS08430 (DAT300_16360) | - | 1714736..1715287 (-) | 552 | WP_015647209.1 | isoprenylcysteine carboxyl methyltransferase family protein | - |
| H7679_RS08435 (DAT300_16370) | - | 1715678..1717066 (-) | 1389 | WP_024395988.1 | sensor histidine kinase | - |
| H7679_RS08440 (DAT300_16380) | scnR | 1717068..1717718 (-) | 651 | WP_024395987.1 | response regulator transcription factor | Regulator |
| H7679_RS08445 (DAT300_16390) | - | 1717950..1718651 (+) | 702 | WP_024382375.1 | CPBP family intramembrane glutamic endopeptidase | - |
| H7679_RS08450 | - | 1718885..1720141 (+) | 1257 | WP_184495703.1 | ISL3 family transposase | - |
Sequence
Protein
Download Length: 216 a.a. Molecular weight: 24668.81 Da Isoelectric Point: 4.8839
>NTDB_id=70769 H7679_RS08440 WP_024395987.1 1717068..1717718(-) (scnR) [Streptococcus suis strain DAT300]
MSRILVVEDDIVISQVVCEFLKEHGYQVESVFDGKIALERFQEEQFDLIVLDIMIPSMTGLEVLKEIRKTSQVPILMLTA
MGDEYTQLISFNQIISDYVVKPFSPTILVKRIENILRGKGETDSIEIGAILIQPTSGAVYMEEEEVQLTKKEYEVLLYLA
KRRGKIVSRDNLMMGIWGYTELDSRVLDNHIKNIRKKLPSLPLKTVVGRGYQIEGT
MSRILVVEDDIVISQVVCEFLKEHGYQVESVFDGKIALERFQEEQFDLIVLDIMIPSMTGLEVLKEIRKTSQVPILMLTA
MGDEYTQLISFNQIISDYVVKPFSPTILVKRIENILRGKGETDSIEIGAILIQPTSGAVYMEEEEVQLTKKEYEVLLYLA
KRRGKIVSRDNLMMGIWGYTELDSRVLDNHIKNIRKKLPSLPLKTVVGRGYQIEGT
Nucleotide
Download Length: 651 bp
>NTDB_id=70769 H7679_RS08440 WP_024395987.1 1717068..1717718(-) (scnR) [Streptococcus suis strain DAT300]
ATGTCAAGGATCTTGGTTGTCGAGGATGACATAGTTATTAGTCAAGTTGTTTGTGAGTTTTTAAAAGAACATGGTTATCA
GGTAGAATCTGTTTTTGATGGAAAGATTGCTTTAGAAAGGTTTCAAGAAGAACAATTCGATTTAATTGTTTTAGATATCA
TGATTCCGTCTATGACAGGTTTGGAAGTACTGAAGGAAATTCGCAAAACTTCTCAGGTTCCAATTTTGATGCTGACAGCC
ATGGGTGACGAATATACACAGCTTATTAGTTTTAATCAGATTATAAGTGATTATGTTGTTAAACCGTTTTCACCAACTAT
ATTGGTAAAACGGATTGAGAATATTTTGAGAGGAAAAGGAGAGACAGATAGCATTGAGATAGGAGCAATTCTTATTCAAC
CAACTAGCGGGGCAGTTTATATGGAAGAAGAAGAAGTTCAATTGACGAAAAAAGAATATGAAGTTTTATTATATTTAGCT
AAACGACGTGGGAAAATTGTTAGTCGTGATAACTTGATGATGGGAATATGGGGATATACGGAATTGGATAGTCGTGTCTT
AGATAATCATATCAAGAATATCCGTAAGAAATTGCCGTCACTTCCTTTGAAGACAGTAGTTGGTCGTGGTTATCAAATAG
AGGGTACTTAA
ATGTCAAGGATCTTGGTTGTCGAGGATGACATAGTTATTAGTCAAGTTGTTTGTGAGTTTTTAAAAGAACATGGTTATCA
GGTAGAATCTGTTTTTGATGGAAAGATTGCTTTAGAAAGGTTTCAAGAAGAACAATTCGATTTAATTGTTTTAGATATCA
TGATTCCGTCTATGACAGGTTTGGAAGTACTGAAGGAAATTCGCAAAACTTCTCAGGTTCCAATTTTGATGCTGACAGCC
ATGGGTGACGAATATACACAGCTTATTAGTTTTAATCAGATTATAAGTGATTATGTTGTTAAACCGTTTTCACCAACTAT
ATTGGTAAAACGGATTGAGAATATTTTGAGAGGAAAAGGAGAGACAGATAGCATTGAGATAGGAGCAATTCTTATTCAAC
CAACTAGCGGGGCAGTTTATATGGAAGAAGAAGAAGTTCAATTGACGAAAAAAGAATATGAAGTTTTATTATATTTAGCT
AAACGACGTGGGAAAATTGTTAGTCGTGATAACTTGATGATGGGAATATGGGGATATACGGAATTGGATAGTCGTGTCTT
AGATAATCATATCAAGAATATCCGTAAGAAATTGCCGTCACTTCCTTTGAAGACAGTAGTTGGTCGTGGTTATCAAATAG
AGGGTACTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| scnR | Streptococcus mutans UA159 |
38.767 |
100 |
0.407 |
| micA | Streptococcus pneumoniae Cp1015 |
38.667 |
100 |
0.403 |
| vicR | Streptococcus mutans UA159 |
37.168 |
100 |
0.389 |