Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | K6J63_RS04740 | Genome accession | NZ_AP018765 |
| Coordinates | 894276..894782 (-) | Length | 168 a.a. |
| NCBI ID | WP_042593471.1 | Uniprot ID | A0A0D0HQS7 |
| Organism | Haemophilus influenzae strain CHBN-II-2 isolate 12H49 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 889276..899782
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K6J63_RS04705 (CHBNII2_09060) | hpf | 889509..889832 (-) | 324 | WP_005653397.1 | ribosome hibernation-promoting factor, HPF/YfiA family | - |
| K6J63_RS04710 (CHBNII2_09070) | bamC | 890022..890651 (-) | 630 | WP_038439193.1 | outer membrane protein assembly factor BamC | - |
| K6J63_RS04715 (CHBNII2_09080) | dapA | 890762..891658 (-) | 897 | WP_050846026.1 | 4-hydroxy-tetrahydrodipicolinate synthase | - |
| K6J63_RS04720 (CHBNII2_09090) | bcp | 891759..892226 (+) | 468 | WP_005668209.1 | thioredoxin-dependent thiol peroxidase | - |
| K6J63_RS04725 (CHBNII2_09100) | exbB | 892395..892847 (+) | 453 | WP_005648856.1 | TonB-system energizer ExbB | - |
| K6J63_RS04730 (CHBNII2_09110) | exbD | 892851..893294 (+) | 444 | WP_005648853.1 | TonB system transport protein ExbD | - |
| K6J63_RS04735 (CHBNII2_09120) | - | 893304..894098 (+) | 795 | WP_005686676.1 | energy transducer TonB | - |
| K6J63_RS04740 (CHBNII2_09130) | ssb | 894276..894782 (-) | 507 | WP_042593471.1 | single-stranded DNA-binding protein | Machinery gene |
| K6J63_RS04745 (CHBNII2_09140) | uvrA | 894936..897767 (+) | 2832 | WP_058222191.1 | excinuclease ABC subunit UvrA | - |
Sequence
Protein
Download Length: 168 a.a. Molecular weight: 18753.50 Da Isoelectric Point: 5.2649
>NTDB_id=70769 K6J63_RS04740 WP_042593471.1 894276..894782(-) (ssb) [Haemophilus influenzae strain CHBN-II-2 isolate 12H49]
MAGINKVIIVGHLGNDPEIRTMPNGDAVANISVATSESWNDRNTGERREVTEWHRIVFYRRQAEICGEYLRKGSQVYVEG
RLKTRKWQDQNGQDRYTTEIQGDVMQMLGGRNQNASGSGNDMGGTPQSSYQARQTNNGNSYQSSRPAPQQSAPQAEPPMD
GFDDDIPF
MAGINKVIIVGHLGNDPEIRTMPNGDAVANISVATSESWNDRNTGERREVTEWHRIVFYRRQAEICGEYLRKGSQVYVEG
RLKTRKWQDQNGQDRYTTEIQGDVMQMLGGRNQNASGSGNDMGGTPQSSYQARQTNNGNSYQSSRPAPQQSAPQAEPPMD
GFDDDIPF
Nucleotide
Download Length: 507 bp
>NTDB_id=70769 K6J63_RS04740 WP_042593471.1 894276..894782(-) (ssb) [Haemophilus influenzae strain CHBN-II-2 isolate 12H49]
ATGGCTGGAATTAATAAAGTCATTATTGTAGGTCATTTAGGTAATGATCCTGAAATTCGTACTATGCCAAACGGCGATGC
CGTTGCAAATATCAGCGTAGCAACCAGTGAAAGCTGGAACGATCGTAATACTGGCGAACGCCGTGAAGTAACAGAATGGC
ACCGCATTGTATTCTATCGTCGTCAAGCAGAGATTTGCGGCGAATATTTACGTAAAGGTTCTCAAGTATATGTGGAGGGT
CGTTTAAAAACGCGTAAATGGCAAGATCAAAACGGTCAAGATCGTTACACCACAGAAATTCAAGGCGATGTAATGCAAAT
GCTTGGTGGACGTAATCAAAACGCAAGTGGTTCTGGTAATGATATGGGCGGTACGCCACAATCTTCTTACCAAGCTCGTC
AAACTAACAATGGTAATAGTTATCAATCATCTCGCCCAGCTCCACAACAATCTGCACCACAGGCTGAACCACCAATGGAT
GGATTTGATGACGATATTCCGTTCTAA
ATGGCTGGAATTAATAAAGTCATTATTGTAGGTCATTTAGGTAATGATCCTGAAATTCGTACTATGCCAAACGGCGATGC
CGTTGCAAATATCAGCGTAGCAACCAGTGAAAGCTGGAACGATCGTAATACTGGCGAACGCCGTGAAGTAACAGAATGGC
ACCGCATTGTATTCTATCGTCGTCAAGCAGAGATTTGCGGCGAATATTTACGTAAAGGTTCTCAAGTATATGTGGAGGGT
CGTTTAAAAACGCGTAAATGGCAAGATCAAAACGGTCAAGATCGTTACACCACAGAAATTCAAGGCGATGTAATGCAAAT
GCTTGGTGGACGTAATCAAAACGCAAGTGGTTCTGGTAATGATATGGGCGGTACGCCACAATCTTCTTACCAAGCTCGTC
AAACTAACAATGGTAATAGTTATCAATCATCTCGCCCAGCTCCACAACAATCTGCACCACAGGCTGAACCACCAATGGAT
GGATTTGATGACGATATTCCGTTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Glaesserella parasuis strain SC1401 |
67.778 |
100 |
0.726 |
| ssb | Vibrio cholerae strain A1552 |
55.495 |
100 |
0.601 |
| ssb | Neisseria meningitidis MC58 |
50.289 |
100 |
0.518 |
| ssb | Neisseria gonorrhoeae MS11 |
50.289 |
100 |
0.518 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
34.27 |
100 |
0.363 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
35.057 |
100 |
0.363 |