Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   PHA55_RS23855 Genome accession   NZ_CP116044
Coordinates   4896559..4898640 (+) Length   693 a.a.
NCBI ID   WP_033560866.1    Uniprot ID   -
Organism   Escherichia coli strain STEC1575     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4891559..4903640
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PHA55_RS23835 (PHA55_23830) gmk 4892777..4893400 (+) 624 WP_001295237.1 guanylate kinase -
  PHA55_RS23840 (PHA55_23835) rpoZ 4893455..4893730 (+) 276 WP_000135058.1 DNA-directed RNA polymerase subunit omega -
  PHA55_RS23845 (PHA55_23840) spoT 4893749..4895857 (+) 2109 WP_000280488.1 bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase -
  PHA55_RS23850 (PHA55_23845) trmH 4895864..4896553 (+) 690 WP_195466859.1 tRNA (guanosine(18)-2'-O)-methyltransferase TrmH -
  PHA55_RS23855 (PHA55_23850) recG 4896559..4898640 (+) 2082 WP_033560866.1 ATP-dependent DNA helicase RecG Machinery gene
  PHA55_RS23860 (PHA55_23855) - 4898625..4899491 (-) 867 WP_000747329.1 hypothetical protein -
  PHA55_RS23865 (PHA55_23860) gltS 4899494..4900699 (-) 1206 WP_000468836.1 sodium/glutamate symporter -
  PHA55_RS23870 (PHA55_23865) xanP 4900979..4902370 (+) 1392 WP_001295238.1 xanthine/proton symporter XanP -

Sequence

Protein


Download         Length: 693 a.a.        Molecular weight: 76547.49 Da        Isoelectric Point: 7.2276

>NTDB_id=707145 PHA55_RS23855 WP_033560866.1 4896559..4898640(+) (recG) [Escherichia coli strain STEC1575]
MKGRLLDAVPLSSLTGVGAALSNKLAKINLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYATVEGEVLNCNISFGGRRM
MTCQISDGSGILTMRFFNFNAAMKNSLATGRRVLAYGEAKRGKYGAEMIHPEYRVQGDLSTPELQETLTPVYPTTEGVKQ
ATLRKLTDQALDLLDTCAIEELLPPELSQGMMTLPEALRTLHRPPPTLQLSDLETGHHPAQRRLILEELLAHNLSMLALR
AGAQRFHAQPLSDNDALKNKLLAALPFKPTGAQARVVAEIERDMALDVPMMRLVQGDVGSGKTLVAALAALRAIAHGKQV
ALMAPTELLAEQHANNFRNWFAPLGIEVGWLAGKQKGKARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQH
RFGVHQRLALWEKGQQQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRTDIIDRVRHACM
TEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMKPAEKQAVMASFKQGELHLLVATTVIEVGVDVP
NASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLLYKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQ
TGNAEFKVADLLRDQAMIPEVQRLARHIHERYPQQAKALIERWMPETERYSNA

Nucleotide


Download         Length: 2082 bp        

>NTDB_id=707145 PHA55_RS23855 WP_033560866.1 4896559..4898640(+) (recG) [Escherichia coli strain STEC1575]
ATGAAAGGTCGCCTGTTAGATGCTGTCCCACTCAGTTCCCTAACGGGCGTTGGCGCAGCACTTAGTAACAAACTGGCGAA
AATCAACCTGCATACCGTGCAGGATCTACTGTTACACCTTCCCCTGCGCTACGAAGATCGCACCCATCTCTACCCCATCG
GAGAACTACTGCCGGGCGTTTATGCCACGGTGGAAGGCGAAGTGCTGAACTGCAATATCTCCTTCGGCGGTCGGCGGATG
ATGACCTGCCAGATCAGCGACGGTTCCGGCATTCTCACCATGCGCTTTTTCAACTTCAACGCGGCAATGAAAAATAGCCT
GGCGACGGGCCGCCGTGTACTGGCCTATGGCGAAGCAAAGCGCGGCAAATATGGCGCAGAGATGATCCACCCGGAATACC
GCGTGCAGGGCGATCTCAGTACGCCAGAGTTGCAGGAAACGCTCACGCCGGTTTATCCAACAACCGAAGGCGTAAAGCAG
GCCACGCTGCGTAAATTAACCGACCAGGCGCTGGATCTGCTCGACACCTGCGCCATTGAAGAACTCCTGCCGCCGGAACT
GTCACAAGGAATGATGACGCTACCGGAAGCCTTGCGCACCCTGCATCGCCCGCCACCGACGCTACAGCTTAGCGATCTGG
AAACCGGGCATCATCCGGCGCAACGTCGTCTGATTCTGGAAGAACTACTGGCGCACAACCTCAGCATGTTAGCTTTACGT
GCCGGAGCGCAACGTTTTCATGCCCAGCCGCTTAGCGACAATGACGCGCTGAAAAATAAACTTCTTGCTGCCTTACCGTT
TAAGCCAACGGGCGCTCAGGCACGCGTGGTGGCGGAGATCGAGCGCGATATGGCGCTGGATGTGCCGATGATGCGTCTGG
TGCAGGGCGATGTAGGCTCCGGTAAAACACTGGTCGCCGCCCTCGCCGCGCTGCGTGCAATTGCGCACGGCAAACAGGTG
GCGCTGATGGCACCAACCGAATTACTCGCCGAGCAGCACGCCAATAACTTCCGTAACTGGTTTGCTCCGCTCGGTATCGA
AGTGGGCTGGCTCGCCGGTAAGCAGAAAGGTAAAGCACGGCTGGCACAGCAGGAAGCCATCGCCAGCGGTCAGGTGCAGA
TGATTGTCGGTACACACGCCATCTTCCAGGAACAGGTGCAGTTTAACGGCCTGGCGCTGGTGATTATCGACGAACAGCAT
CGTTTTGGCGTACATCAGCGTCTGGCATTGTGGGAGAAAGGCCAGCAGCAGGGCTTCCATCCGCATCAGTTGATCATGAC
CGCCACGCCGATCCCCCGCACGCTGGCAATGACTGCGTATGCCGATCTCGATACCTCGGTGATAGATGAGCTGCCGCCAG
GCCGCACGCCAGTGACTACGGTCGCTATTCCTGATACCCGCCGTACCGACATCATTGACCGCGTGCGCCACGCCTGCATG
ACTGAAGGTCGTCAGGCGTACTGGGTTTGTACGTTGATTGAAGAGTCGGAATTACTGGAAGCGCAGGCGGCGGAAGCTAC
CTGGGAAGAGTTGAAACTGGCGCTACCAGAGTTGAACGTTGGCCTGGTACACGGGCGGATGAAACCTGCCGAGAAACAGG
CGGTGATGGCGTCGTTTAAACAAGGTGAGCTACACCTGCTGGTTGCCACAACCGTTATTGAAGTCGGCGTTGATGTGCCT
AACGCCAGTCTGATGATTATCGAAAACCCGGAGCGTCTGGGTCTGGCGCAGTTACACCAGCTTCGCGGGCGTGTAGGTCG
TGGTGCGGTGGCTTCTCACTGCGTGCTGCTCTACAAAACGCCGCTCTCCAAAACCGCGCAAATTCGGCTGCAAGTGCTGC
GCGACAGCAACGACGGTTTTGTGATTGCACAGAAAGACTTAGAGATTCGCGGACCGGGTGAACTGTTAGGTACGCGTCAG
ACGGGTAATGCTGAGTTTAAAGTGGCGGATTTACTGCGCGATCAGGCGATGATCCCGGAAGTTCAGCGCCTGGCGCGACA
TATTCACGAACGTTACCCACAACAAGCAAAAGCCCTGATAGAACGCTGGATGCCGGAGACGGAACGTTACTCCAACGCAT
GA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(481-588)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(617-676)

DEAD/DEAH box helicase (DEAD)

(273-433)

RecG wedge domain (RecG_wedge)

(15-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

52.381

96.97

0.508
  recG/mmsA Streptococcus pneumoniae R6

38.929

99.711

0.388
  recG/mmsA Streptococcus pneumoniae R36A

38.929

99.711

0.388
  recG Bacillus subtilis subsp. subtilis str. 168

39.367

95.671

0.377