Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   PF976_RS10015 Genome accession   NZ_CP116011
Coordinates   1927791..1929794 (+) Length   667 a.a.
NCBI ID   WP_013352417.1    Uniprot ID   A0A9P1JHT7
Organism   Bacillus amyloliquefaciens strain SRCM124317     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1922791..1934794
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PF976_RS09975 (PF976_09975) - 1923191..1923340 (+) 150 WP_013352411.1 hypothetical protein -
  PF976_RS09980 (PF976_09980) - 1923327..1924157 (+) 831 WP_013352412.1 prohibitin family protein -
  PF976_RS09985 (PF976_09985) - 1924185..1924634 (-) 450 WP_013352413.1 YndM family protein -
  PF976_RS09990 (PF976_09990) - 1924791..1925219 (+) 429 WP_013352414.1 hypothetical protein -
  PF976_RS09995 (PF976_09995) dinR/lexA 1925568..1926188 (-) 621 WP_007611720.1 transcriptional repressor LexA Regulator
  PF976_RS10000 (PF976_10000) yneA 1926345..1926656 (+) 312 WP_013352415.1 cell division suppressor protein YneA -
  PF976_RS10005 (PF976_10005) - 1926672..1927322 (+) 651 WP_013352416.1 recombinase family protein -
  PF976_RS10010 (PF976_10010) - 1927391..1927624 (+) 234 WP_003153997.1 DUF896 domain-containing protein -
  PF976_RS10015 (PF976_10015) recP/tkt 1927791..1929794 (+) 2004 WP_013352417.1 transketolase Machinery gene
  PF976_RS10020 (PF976_10020) sirA 1929945..1930391 (+) 447 WP_013352418.1 sporulation inhibitor of replication protein SirA -
  PF976_RS10025 (PF976_10025) - 1930477..1930695 (+) 219 WP_003153994.1 YneF family protein -
  PF976_RS10030 (PF976_10030) - 1930768..1930941 (-) 174 WP_088030684.1 aspartyl-phosphate phosphatase Spo0E family protein -
  PF976_RS10035 (PF976_10035) - 1931143..1931850 (+) 708 WP_088030531.1 cytochrome c biogenesis protein CcdA -
  PF976_RS10040 (PF976_10040) pilH 1931935..1932297 (+) 363 WP_013352421.1 response regulator Machinery gene
  PF976_RS10045 (PF976_10045) - 1932377..1932868 (+) 492 WP_088030532.1 CcdC family protein -
  PF976_RS10050 (PF976_10050) - 1932896..1933324 (-) 429 WP_147785954.1 DUF2621 domain-containing protein -
  PF976_RS10055 (PF976_10055) - 1933559..1933930 (-) 372 WP_013352424.1 spore coat protein -
  PF976_RS10060 (PF976_10060) - 1934024..1934170 (-) 147 WP_003153984.1 small acid-soluble spore protein P -
  PF976_RS10065 (PF976_10065) sspO 1934200..1934346 (-) 147 WP_003153982.1 acid-soluble spore protein SspO -

Sequence

Protein


Download         Length: 667 a.a.        Molecular weight: 72570.62 Da        Isoelectric Point: 4.8151

>NTDB_id=706755 PF976_RS10015 WP_013352417.1 1927791..1929794(+) (recP/tkt) [Bacillus amyloliquefaciens strain SRCM124317]
MDTIEKKSVATIRTLSIDAIEKANSGHPGMPMGAAPMAYTLWTKFMNVNPQNPGWFNRDRFVLSAGHGSMLLYSMLHLSG
YDLSIDDLKQFRQWGSKTPGHPEFGHTAGVDATTGPLGQGIAMAVGMAIAERHLAETYNRDSFNVVDHYTYSICGDGDLM
EGISSEAASLAGHLELGRLIVLYDSNDISLDGDLDRSFSENVKQRFEAMNWEVLYVEDGNNIAELTAAIEKARQNDKKPT
LIEVKTTIGFGSPNRAGTSGVHGAPLGQEESKLTKEAYAWTFEEDFYVPDEVYAHFNQAVKEAGSKKEQEWNELFAAYQE
KYPELAEQLSLGMKGELPKDWDQEVPVYEKGSSLASRASSGEVLNGIAKKIPFFVGGSADLAGSNKTTIKNAGDFTARDY
AGKNFWFGVREFAMGAALNGMALHGGLRVFGGTFFVFSDYLRPAIRLASLMGLPVTYVFTHDSIAVGEDGPTHEPIEQLA
SLRALPNLSVIRPADGNETAAAWKLAVQSQDHPTALVLTRQNLPTIDQQAEEAYAGVEKGAYIVSKAQTDAPDALLLATG
SEVGLAIEAQAKLAEENVHVSVVSMPSWDRFEKQSAEYKNSVLPPNVTKRLAIEMGSSFGWGKFTGLEGDVLAIDRFGAS
APGETIMKEYGFTAENVADRVKKLLNK

Nucleotide


Download         Length: 2004 bp        

>NTDB_id=706755 PF976_RS10015 WP_013352417.1 1927791..1929794(+) (recP/tkt) [Bacillus amyloliquefaciens strain SRCM124317]
ATGGATACAATTGAAAAGAAATCAGTTGCCACCATACGTACACTGTCTATAGACGCAATTGAAAAAGCTAATTCCGGACA
CCCGGGCATGCCGATGGGAGCCGCTCCGATGGCTTACACGCTGTGGACGAAATTTATGAATGTGAATCCGCAGAATCCAG
GCTGGTTTAACCGCGACCGTTTTGTTTTATCAGCAGGACACGGTTCAATGCTTTTATACAGCATGCTGCATTTAAGCGGA
TATGACCTCAGCATTGATGATCTGAAACAGTTCCGTCAATGGGGAAGCAAAACACCGGGACATCCGGAGTTCGGACATAC
AGCAGGAGTAGACGCAACGACCGGGCCTCTCGGACAGGGTATCGCGATGGCAGTGGGAATGGCAATCGCAGAACGCCATC
TGGCTGAGACATATAACCGTGATTCATTCAACGTAGTTGATCATTATACATACAGTATTTGCGGAGACGGCGATTTGATG
GAAGGCATTTCTTCCGAAGCAGCTTCTCTTGCAGGCCATCTGGAGTTAGGCCGCCTGATCGTATTATACGATTCTAATGA
TATTTCTTTAGACGGTGATTTAGACCGTTCTTTCTCTGAAAATGTAAAACAGCGTTTTGAAGCAATGAACTGGGAAGTCC
TTTATGTTGAGGACGGAAATAACATCGCTGAATTGACGGCTGCAATTGAAAAAGCGCGCCAGAATGATAAAAAACCGACT
TTAATTGAAGTGAAGACCACAATCGGTTTCGGTTCTCCAAACCGCGCGGGTACATCTGGCGTTCACGGCGCTCCATTAGG
ACAAGAAGAGAGCAAGCTGACGAAAGAAGCGTACGCTTGGACATTTGAAGAAGATTTTTATGTTCCGGATGAAGTATACG
CGCATTTCAACCAAGCTGTAAAAGAAGCCGGCTCGAAAAAAGAACAGGAATGGAATGAACTGTTCGCGGCTTATCAAGAA
AAATATCCTGAGCTTGCTGAACAGCTGTCACTCGGAATGAAAGGCGAGCTTCCGAAAGACTGGGATCAGGAAGTTCCTGT
TTATGAAAAAGGCAGCAGTCTTGCTTCCCGCGCATCTTCAGGTGAGGTGCTGAACGGCATCGCTAAGAAAATTCCTTTCT
TTGTCGGGGGATCTGCTGACCTTGCGGGTTCAAACAAAACGACAATCAAAAATGCAGGAGACTTCACGGCCAGAGACTAC
GCCGGGAAAAACTTCTGGTTCGGGGTCCGTGAATTCGCGATGGGCGCTGCTTTAAACGGAATGGCGCTTCACGGCGGCCT
TCGCGTATTCGGCGGCACATTCTTTGTGTTCTCTGACTATTTAAGACCTGCCATTCGTCTGGCGTCATTAATGGGGCTGC
CTGTCACTTATGTATTCACGCATGACAGTATTGCCGTAGGAGAAGACGGACCGACTCACGAACCGATTGAGCAGCTTGCT
TCTTTACGCGCACTTCCTAACCTTTCTGTGATCAGACCTGCTGACGGAAATGAAACCGCAGCTGCGTGGAAGCTTGCCGT
TCAAAGCCAGGATCACCCGACAGCTCTTGTATTAACACGCCAAAACCTGCCGACAATTGATCAGCAGGCTGAAGAAGCGT
ATGCCGGAGTGGAAAAAGGGGCTTATATCGTTTCCAAAGCACAAACGGATGCACCGGACGCACTTCTTTTAGCGACGGGT
TCTGAAGTCGGACTCGCGATTGAAGCTCAGGCGAAGCTTGCTGAAGAAAACGTTCACGTTTCTGTAGTCAGCATGCCGAG
CTGGGACCGCTTCGAAAAACAATCGGCTGAGTACAAAAACAGCGTACTTCCTCCGAACGTAACGAAACGTCTTGCGATTG
AAATGGGATCAAGCTTCGGATGGGGCAAATTTACCGGTCTTGAAGGAGACGTTCTCGCAATTGACCGTTTCGGCGCTTCA
GCTCCGGGAGAAACAATTATGAAAGAATACGGGTTTACTGCAGAAAACGTGGCTGACCGCGTAAAAAAACTGCTAAACAA
ATAA

Domains

Predicted by InterProScan.

Transketolase, pyrimidine binding domain (Transket_pyr)

(354-524)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(5-338)

Transketolase, C-terminal domain (Transketolase_C)

(549-657)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9P1JHT7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

55.891

99.25

0.555