Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   PF976_RS09995 Genome accession   NZ_CP116011
Coordinates   1925568..1926188 (-) Length   206 a.a.
NCBI ID   WP_007611720.1    Uniprot ID   A0AAI8HP04
Organism   Bacillus amyloliquefaciens strain SRCM124317     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1920568..1931188
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PF976_RS09955 (PF976_09955) - 1920977..1921216 (+) 240 WP_013352407.1 TM2 domain-containing protein -
  PF976_RS09960 (PF976_09960) - 1921387..1921821 (+) 435 WP_013352408.1 dUTP diphosphatase -
  PF976_RS09965 (PF976_09965) - 1921872..1922057 (-) 186 WP_013352409.1 DUF4177 domain-containing protein -
  PF976_RS09970 (PF976_09970) - 1922263..1923084 (+) 822 WP_271229921.1 poly-gamma-glutamate hydrolase family protein -
  PF976_RS09975 (PF976_09975) - 1923191..1923340 (+) 150 WP_013352411.1 hypothetical protein -
  PF976_RS09980 (PF976_09980) - 1923327..1924157 (+) 831 WP_013352412.1 prohibitin family protein -
  PF976_RS09985 (PF976_09985) - 1924185..1924634 (-) 450 WP_013352413.1 YndM family protein -
  PF976_RS09990 (PF976_09990) - 1924791..1925219 (+) 429 WP_013352414.1 hypothetical protein -
  PF976_RS09995 (PF976_09995) dinR/lexA 1925568..1926188 (-) 621 WP_007611720.1 transcriptional repressor LexA Regulator
  PF976_RS10000 (PF976_10000) yneA 1926345..1926656 (+) 312 WP_013352415.1 cell division suppressor protein YneA -
  PF976_RS10005 (PF976_10005) - 1926672..1927322 (+) 651 WP_013352416.1 recombinase family protein -
  PF976_RS10010 (PF976_10010) - 1927391..1927624 (+) 234 WP_003153997.1 DUF896 domain-containing protein -
  PF976_RS10015 (PF976_10015) recP/tkt 1927791..1929794 (+) 2004 WP_013352417.1 transketolase Machinery gene
  PF976_RS10020 (PF976_10020) sirA 1929945..1930391 (+) 447 WP_013352418.1 sporulation inhibitor of replication protein SirA -
  PF976_RS10025 (PF976_10025) - 1930477..1930695 (+) 219 WP_003153994.1 YneF family protein -
  PF976_RS10030 (PF976_10030) - 1930768..1930941 (-) 174 WP_088030684.1 aspartyl-phosphate phosphatase Spo0E family protein -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23046.64 Da        Isoelectric Point: 5.1645

>NTDB_id=706754 PF976_RS09995 WP_007611720.1 1925568..1926188(-) (dinR/lexA) [Bacillus amyloliquefaciens strain SRCM124317]
MTKLSKRQLDILRFIKEEVKTKGYPPSVREIGEAVGLASSSTVHGHLARLETKGLIRRDPTKPRAIEVLDEEEVQIPKSQ
VVNVPVIGKVTAGIPITAVENIDEYFPLPDRMVPPGEHVFMLEIMGESMIDAGIFDKDYVIVKQQNTANNGEIVVAMTED
DEATVKRFYKEDNYVRLQPENPTMEPIILQNVSILGKVIGVFRAVH

Nucleotide


Download         Length: 621 bp        

>NTDB_id=706754 PF976_RS09995 WP_007611720.1 1925568..1926188(-) (dinR/lexA) [Bacillus amyloliquefaciens strain SRCM124317]
ATGACGAAGCTATCAAAAAGGCAGCTTGATATCCTGCGTTTTATTAAAGAAGAGGTAAAAACAAAAGGATATCCGCCTTC
TGTAAGAGAGATAGGAGAAGCAGTAGGACTGGCTTCCAGTTCAACCGTGCACGGACATTTGGCACGGCTTGAGACAAAAG
GCCTGATCAGACGGGACCCTACTAAACCAAGGGCAATTGAGGTATTGGATGAAGAAGAAGTCCAAATTCCGAAAAGCCAG
GTCGTAAATGTTCCGGTAATCGGGAAAGTGACGGCGGGTATTCCGATTACGGCTGTTGAAAATATCGATGAGTATTTTCC
GCTTCCTGACCGGATGGTTCCTCCGGGCGAACATGTATTTATGTTAGAAATCATGGGAGAAAGTATGATTGACGCCGGCA
TTTTTGACAAAGATTACGTCATTGTCAAACAGCAGAACACGGCTAATAACGGGGAAATCGTGGTGGCTATGACCGAAGAT
GATGAAGCGACGGTCAAGCGCTTCTATAAAGAGGACAATTATGTGCGGCTGCAGCCGGAAAATCCGACGATGGAACCGAT
TATCCTGCAAAACGTAAGCATTTTAGGGAAAGTCATCGGCGTATTCAGAGCCGTCCATTAA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(85-199)

LexA DNA binding domain (LexA_DNA_bind)

(1-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0AAI8HP04

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

92.718

100

0.927