Detailed information    

insolico Bioinformatically predicted

Overview

Name   stkP   Type   Regulator
Locus tag   PF976_RS07935 Genome accession   NZ_CP116011
Coordinates   1503530..1505473 (+) Length   647 a.a.
NCBI ID   WP_014470409.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain SRCM124317     
Function   require for competence development; phosphorylate ComE (predicted from homology)   
Competence regulation

Genomic Context

Location: 1498530..1510473
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PF976_RS07910 (PF976_07910) def 1498904..1499386 (+) 483 WP_013352215.1 peptide deformylase -
  PF976_RS07915 (PF976_07915) fmt 1499391..1500344 (+) 954 WP_013352216.1 methionyl-tRNA formyltransferase -
  PF976_RS07920 (PF976_07920) rsmB 1500331..1501674 (+) 1344 WP_013352217.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  PF976_RS07925 (PF976_07925) rlmN 1501678..1502769 (+) 1092 WP_014470411.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  PF976_RS07930 (PF976_07930) - 1502775..1503536 (+) 762 WP_014470410.1 Stp1/IreP family PP2C-type Ser/Thr phosphatase -
  PF976_RS07935 (PF976_07935) stkP 1503530..1505473 (+) 1944 WP_014470409.1 Stk1 family PASTA domain-containing Ser/Thr kinase Regulator
  PF976_RS07940 (PF976_07940) rsgA 1505488..1506378 (+) 891 WP_014470408.1 ribosome small subunit-dependent GTPase A -
  PF976_RS07945 (PF976_07945) rpe 1506380..1507033 (+) 654 WP_014470407.1 ribulose-phosphate 3-epimerase -
  PF976_RS07950 (PF976_07950) - 1507101..1507745 (+) 645 WP_013352223.1 thiamine diphosphokinase -
  PF976_RS07955 (PF976_07955) spoVM 1507832..1507912 (+) 81 WP_003154329.1 stage V sporulation protein SpoVM -
  PF976_RS07960 (PF976_07960) rpmB 1507989..1508177 (-) 189 WP_003154328.1 50S ribosomal protein L28 -
  PF976_RS07965 (PF976_07965) - 1508437..1508799 (+) 363 WP_013352224.1 Asp23/Gls24 family envelope stress response protein -

Sequence

Protein


Download         Length: 647 a.a.        Molecular weight: 71542.16 Da        Isoelectric Point: 4.9805

>NTDB_id=706739 PF976_RS07935 WP_014470409.1 1503530..1505473(+) (stkP) [Bacillus amyloliquefaciens strain SRCM124317]
MLTGKRISGRYHILRPIGGGGMANVFLAEDIILEREVAIKILRFDFVNDIDFIRRFRREAQSASSLDHPNIVSIYDIGEE
GDIYYIVMEYVEGMTLKEYITAHGPLHPKEALSVMEQIVSAIAHAHHNHIVHRDIKPHNILIDHLGHIKVTDFGIATALT
STTITHTNSVLGSVHYLSPEQARGGLATKKSDIYALGIVLFELLTGKMPFDGESAVSIALKHLQAETPSARKWNPSIPQS
VENIILKATAKDPFHRYESAEDMEADIRTAFDAGRLNEQKFSVQDDEEMTKAIPVITDGAIAAPQAETPAETDDKEQPSA
KKKKRKWPWVLLAVCFIFIMAAVLAVTVFPSLFMPKEVSVPDVRGMKYEKAEALLEKNGLQADPDMTDIEDEKIEEGLMV
KTDPKAGSAVKEGSSVKLYKSIGKPKTRLIDVKGRPIDDAKKTLKDKGFKHVNVKEENDDSAAGTVIDQNPSAGTDMVAS
DDEVSLTVSLGPADVTLRDLKTYSKEAASGYLEDNGLQLVEKEAHSDDVPEGQVMKQEPSAGTAVKPGSDVEVTFSLGPE
EKPAKTVKEKISIPYEPEHEGDELEVQIAIDDKDHSISDTYDSFKIKEPTEKTIELKIDQGQKGYYQVMVDHKVVSYKTI
EYPKDND

Nucleotide


Download         Length: 1944 bp        

>NTDB_id=706739 PF976_RS07935 WP_014470409.1 1503530..1505473(+) (stkP) [Bacillus amyloliquefaciens strain SRCM124317]
GTGCTAACCGGCAAGCGGATCAGCGGGCGTTATCATATCCTCCGGCCCATTGGCGGCGGCGGAATGGCGAACGTTTTTTT
AGCTGAGGACATCATTCTCGAACGTGAAGTCGCAATTAAGATTCTGCGGTTTGACTTTGTGAATGACATTGATTTTATCA
GGCGTTTCAGAAGAGAAGCACAGTCGGCATCAAGCCTTGATCATCCGAATATCGTCAGTATTTACGATATCGGGGAGGAA
GGCGACATTTATTATATTGTCATGGAATATGTGGAAGGCATGACGTTAAAGGAATACATAACCGCACACGGACCGCTTCA
TCCGAAAGAAGCGCTGTCTGTTATGGAGCAGATCGTCTCAGCCATCGCCCATGCCCATCATAACCATATCGTGCACCGGG
ATATCAAACCGCACAATATTTTGATAGATCATTTAGGACATATTAAGGTGACGGATTTCGGCATCGCCACAGCTCTCACT
TCGACGACAATCACACATACGAATTCTGTGCTCGGCTCGGTTCATTATTTGTCTCCGGAGCAGGCGAGAGGCGGTCTGGC
AACGAAAAAATCGGATATTTACGCGCTCGGCATCGTGCTGTTTGAGCTTTTAACAGGCAAAATGCCTTTTGACGGAGAAT
CAGCCGTCAGCATTGCGTTAAAGCACCTGCAAGCAGAAACGCCTTCCGCCAGAAAGTGGAACCCTTCCATTCCGCAGAGC
GTGGAAAACATTATTTTAAAGGCAACCGCCAAAGACCCGTTTCACCGCTATGAAAGCGCAGAGGACATGGAAGCGGACAT
CAGAACGGCTTTTGACGCCGGCAGGCTGAATGAACAAAAATTCTCCGTGCAGGATGATGAGGAAATGACGAAAGCGATTC
CCGTTATTACTGACGGTGCGATAGCCGCGCCGCAGGCGGAAACGCCGGCAGAGACGGATGATAAAGAACAGCCGTCCGCC
AAAAAGAAGAAACGGAAATGGCCGTGGGTTTTGCTGGCTGTCTGCTTTATTTTCATAATGGCGGCTGTTCTTGCGGTCAC
CGTGTTCCCGTCTTTGTTTATGCCAAAAGAGGTAAGCGTCCCCGATGTACGGGGCATGAAGTACGAAAAAGCGGAAGCCC
TGCTTGAAAAGAACGGCCTCCAAGCGGATCCTGATATGACGGACATTGAAGATGAAAAAATCGAAGAGGGATTAATGGTC
AAAACTGATCCGAAAGCGGGTTCTGCCGTTAAAGAAGGCTCTTCTGTAAAACTGTACAAAAGCATCGGGAAACCGAAAAC
CCGGCTGATTGACGTGAAAGGCCGGCCGATCGATGATGCGAAAAAAACGCTTAAGGATAAAGGCTTCAAACATGTCAATG
TAAAAGAAGAGAACGATGACAGTGCGGCTGGCACTGTAATTGATCAGAACCCATCAGCCGGCACCGACATGGTCGCAAGT
GATGATGAAGTCAGCTTAACAGTCAGCCTCGGACCGGCGGACGTTACGCTGAGAGACTTAAAAACATACAGCAAAGAAGC
GGCTTCCGGGTATCTTGAAGATAACGGCCTGCAGCTTGTTGAAAAGGAAGCTCACTCAGATGACGTGCCTGAGGGACAGG
TCATGAAGCAAGAGCCGTCAGCCGGCACTGCGGTTAAGCCGGGAAGTGATGTTGAAGTAACGTTTTCGCTCGGGCCTGAA
GAAAAACCGGCCAAAACGGTAAAAGAAAAAATCAGCATCCCCTACGAACCCGAACATGAAGGGGACGAGCTCGAAGTGCA
AATCGCCATCGATGATAAAGACCACAGCATCTCTGATACGTATGATTCGTTTAAAATAAAAGAACCGACTGAAAAAACAA
TTGAACTGAAGATTGATCAGGGACAGAAGGGGTATTATCAAGTGATGGTCGATCATAAAGTCGTCAGCTACAAAACGATT
GAATACCCGAAAGATAATGACTGA

Domains

Predicted by InterProScan.

PASTA domain (PASTA)

(431-489)

PASTA domain (PASTA)

(495-556)

PASTA domain (PASTA)

(358-419)

Protein kinase domain (Pkinase)

(11-260)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  stkP Streptococcus pneumoniae TIGR4

38.636

95.209

0.368
  stkP Streptococcus pneumoniae D39

38.312

95.209

0.365
  stkP Streptococcus pneumoniae R6

38.312

95.209

0.365
  stkP Streptococcus pneumoniae Rx1

38.149

95.209

0.363