Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   NLV76_RS18080 Genome accession   NZ_CP100752
Coordinates   3523581..3524270 (-) Length   229 a.a.
NCBI ID   WP_254501645.1    Uniprot ID   -
Organism   Bacillus halotolerans strain MEC_B301     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3518581..3529270
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NLV76_RS18045 (NLV76_18045) flgN 3518763..3519245 (-) 483 WP_254501638.1 flagellar protein FlgN -
  NLV76_RS18050 (NLV76_18050) flgM 3519260..3519526 (-) 267 WP_254501639.1 flagellar biosynthesis anti-sigma factor FlgM -
  NLV76_RS18055 (NLV76_18055) - 3519606..3520025 (-) 420 WP_254501640.1 TIGR03826 family flagellar region protein -
  NLV76_RS18060 (NLV76_18060) comFC 3520099..3520821 (-) 723 WP_254501641.1 double zinc ribbon domain-containing protein Machinery gene
  NLV76_RS18065 (NLV76_18065) - 3520785..3521081 (-) 297 WP_254501642.1 late competence development ComFB family protein -
  NLV76_RS18070 (NLV76_18070) comFA 3521138..3522532 (-) 1395 WP_254501643.1 ATP-dependent helicase ComFA Machinery gene
  NLV76_RS18075 (NLV76_18075) - 3522639..3523484 (-) 846 WP_254501644.1 DegV family protein -
  NLV76_RS18080 (NLV76_18080) degU 3523581..3524270 (-) 690 WP_254501645.1 two-component system response regulator DegU Regulator
  NLV76_RS18085 (NLV76_18085) degS 3524353..3525510 (-) 1158 WP_044159475.1 two-component sensor histidine kinase DegS Regulator
  NLV76_RS18090 (NLV76_18090) - 3525727..3526380 (+) 654 WP_044159478.1 YigZ family protein -
  NLV76_RS18095 (NLV76_18095) - 3526380..3527558 (+) 1179 WP_254501646.1 LCP family protein -
  NLV76_RS18100 (NLV76_18100) - 3527634..3528710 (-) 1077 WP_044159481.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25850.53 Da        Isoelectric Point: 5.9446

>NTDB_id=706713 NLV76_RS18080 WP_254501645.1 3523581..3524270(-) (degU) [Bacillus halotolerans strain MEC_B301]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVEPYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=706713 NLV76_RS18080 WP_254501645.1 3523581..3524270(-) (degU) [Bacillus halotolerans strain MEC_B301]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAGCGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCGGAAGGAGACGACGGAGATGAAGCGGCTCGTATCGTTGAGCACTATCATCCTGATGTCGTGA
TCATGGATATCAATATGCCGAACGTAAATGGCGTGGAAGCTACAAAGCAGCTTGTAGAGCCGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAGAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACACTAATTGAAGCAGTTAAAGTAGTTGCCGAGGGCGGTTCTTACCTTCACCCGAAGGTTACTCACA
ACCTCGTAAACGAATTCCGACGTCTTGCAACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTCTATCCAGAGATTCGC
AGACCATTACATATTTTAACAAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGCATCGG
TGAATCATTGTTTATCAGTGAAAAAACTGTTAAAAACCATGTCAGCAATATCTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTGGTGGTCGCCATTAAAAATGGTTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-118)

Bacterial regulatory proteins, luxR family (GerE)

(165-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996