Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   NLV76_RS18060 Genome accession   NZ_CP100752
Coordinates   3520099..3520821 (-) Length   240 a.a.
NCBI ID   WP_254501641.1    Uniprot ID   -
Organism   Bacillus halotolerans strain MEC_B301     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3515099..3525821
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NLV76_RS18025 (NLV76_18025) fliW 3515241..3515672 (-) 432 WP_024123020.1 flagellar assembly protein FliW -
  NLV76_RS18030 (NLV76_18030) - 3515693..3516268 (-) 576 WP_254501636.1 DUF6470 family protein -
  NLV76_RS18035 (NLV76_18035) flgL 3516315..3517211 (-) 897 WP_059292439.1 flagellar hook-associated protein FlgL -
  NLV76_RS18040 (NLV76_18040) flgK 3517221..3518744 (-) 1524 WP_254501637.1 flagellar hook-associated protein FlgK -
  NLV76_RS18045 (NLV76_18045) flgN 3518763..3519245 (-) 483 WP_254501638.1 flagellar protein FlgN -
  NLV76_RS18050 (NLV76_18050) flgM 3519260..3519526 (-) 267 WP_254501639.1 flagellar biosynthesis anti-sigma factor FlgM -
  NLV76_RS18055 (NLV76_18055) - 3519606..3520025 (-) 420 WP_254501640.1 TIGR03826 family flagellar region protein -
  NLV76_RS18060 (NLV76_18060) comFC 3520099..3520821 (-) 723 WP_254501641.1 double zinc ribbon domain-containing protein Machinery gene
  NLV76_RS18065 (NLV76_18065) - 3520785..3521081 (-) 297 WP_254501642.1 late competence development ComFB family protein -
  NLV76_RS18070 (NLV76_18070) comFA 3521138..3522532 (-) 1395 WP_254501643.1 ATP-dependent helicase ComFA Machinery gene
  NLV76_RS18075 (NLV76_18075) - 3522639..3523484 (-) 846 WP_254501644.1 DegV family protein -
  NLV76_RS18080 (NLV76_18080) degU 3523581..3524270 (-) 690 WP_254501645.1 two-component system response regulator DegU Regulator
  NLV76_RS18085 (NLV76_18085) degS 3524353..3525510 (-) 1158 WP_044159475.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27011.25 Da        Isoelectric Point: 8.6997

>NTDB_id=706711 NLV76_RS18060 WP_254501641.1 3520099..3520821(-) (comFC) [Bacillus halotolerans strain MEC_B301]
MQNETGGGSKKLICLLCDSQFSQAVSWCSLFLLKPDDRVCQSCRNKLQIIKGAICPLCGRPQTAHEVCADCEAWKSRIDD
GLRLSQNRSVYLYNDMMKETLARMKFRGDAAIISAFKNAFSSEFSAVYPDKRLVLVPIPLSEERTAERGFNQSQMLAECL
NRPIINPLIRLNNEKQSKKKKTERLLSEHVFETKNRSVEGMDIVLIDDLYTTGATLHYAARCLMEKGKAGSVSSFTLVRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=706711 NLV76_RS18060 WP_254501641.1 3520099..3520821(-) (comFC) [Bacillus halotolerans strain MEC_B301]
ATGCAAAACGAGACAGGAGGAGGCTCTAAAAAACTGATCTGTCTATTATGTGATTCACAATTTTCTCAAGCTGTTTCATG
GTGCTCACTATTCTTATTAAAACCTGACGACAGGGTCTGTCAGTCCTGCAGAAATAAATTACAGATCATCAAAGGGGCCA
TCTGTCCGCTTTGCGGCAGGCCTCAAACCGCTCATGAAGTGTGCGCGGATTGCGAGGCATGGAAATCAAGAATAGATGAC
GGCTTAAGGCTCAGTCAAAACCGTTCTGTTTACTTATATAATGACATGATGAAAGAAACGCTCGCCCGAATGAAATTCAG
GGGAGATGCAGCAATAATAAGCGCTTTTAAAAATGCCTTTTCCTCAGAATTCTCTGCTGTCTATCCAGATAAACGCCTTG
TGCTCGTTCCCATTCCGTTAAGCGAAGAACGGACAGCGGAACGCGGTTTTAACCAGTCACAAATGCTTGCTGAATGCTTA
AACCGGCCCATCATCAATCCTCTCATCCGCCTGAATAATGAAAAGCAGTCTAAGAAAAAGAAAACGGAGCGCCTGCTTTC
AGAGCATGTTTTTGAAACAAAAAACAGATCGGTTGAGGGTATGGATATCGTTTTAATCGACGATCTTTATACTACGGGTG
CCACTTTGCACTATGCTGCCCGCTGTTTAATGGAGAAAGGCAAAGCTGGTTCAGTGTCATCTTTTACCTTAGTGAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)

Phosphoribosyl transferase domain (Pribosyltran)

(188-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

75.417

100

0.754