Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   NLV76_RS18070 Genome accession   NZ_CP100752
Coordinates   3521138..3522532 (-) Length   464 a.a.
NCBI ID   WP_254501643.1    Uniprot ID   -
Organism   Bacillus halotolerans strain MEC_B301     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3516138..3527532
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NLV76_RS18035 (NLV76_18035) flgL 3516315..3517211 (-) 897 WP_059292439.1 flagellar hook-associated protein FlgL -
  NLV76_RS18040 (NLV76_18040) flgK 3517221..3518744 (-) 1524 WP_254501637.1 flagellar hook-associated protein FlgK -
  NLV76_RS18045 (NLV76_18045) flgN 3518763..3519245 (-) 483 WP_254501638.1 flagellar protein FlgN -
  NLV76_RS18050 (NLV76_18050) flgM 3519260..3519526 (-) 267 WP_254501639.1 flagellar biosynthesis anti-sigma factor FlgM -
  NLV76_RS18055 (NLV76_18055) - 3519606..3520025 (-) 420 WP_254501640.1 TIGR03826 family flagellar region protein -
  NLV76_RS18060 (NLV76_18060) comFC 3520099..3520821 (-) 723 WP_254501641.1 double zinc ribbon domain-containing protein Machinery gene
  NLV76_RS18065 (NLV76_18065) - 3520785..3521081 (-) 297 WP_254501642.1 late competence development ComFB family protein -
  NLV76_RS18070 (NLV76_18070) comFA 3521138..3522532 (-) 1395 WP_254501643.1 ATP-dependent helicase ComFA Machinery gene
  NLV76_RS18075 (NLV76_18075) - 3522639..3523484 (-) 846 WP_254501644.1 DegV family protein -
  NLV76_RS18080 (NLV76_18080) degU 3523581..3524270 (-) 690 WP_254501645.1 two-component system response regulator DegU Regulator
  NLV76_RS18085 (NLV76_18085) degS 3524353..3525510 (-) 1158 WP_044159475.1 two-component sensor histidine kinase DegS Regulator
  NLV76_RS18090 (NLV76_18090) - 3525727..3526380 (+) 654 WP_044159478.1 YigZ family protein -

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 52723.66 Da        Isoelectric Point: 9.4151

>NTDB_id=706712 NLV76_RS18070 WP_254501643.1 3521138..3522532(-) (comFA) [Bacillus halotolerans strain MEC_B301]
MQTKTSESNSLFSKELQQQLQGRHLLRTEIPFSDEIIDWHIEHGYISAEGSISKNKWGYRCNRCGQNDQQYFSSYHSSGE
DKVYCRSCVMMGRVSEDVSLYSWCKEAEANWKPIKLTWDGKLSSGQQKAADVLIEAISKQEELLIWAVCGAGKTELLFPG
IELALNLRLRVCIATPRTDVVLELAPRLNAAFQGADISGLYGGSDDKGRLSPLMISTTHQLLRYKDAFDVMIVDEVDAFP
YSADHTLQFAVQKARKKNSTLVYLSATPPKELKRKTYKGELESVRIPARYHRKPLPEPRFQWCGNWKKKLTRNKIPNAVK
IWIEQHVKEGRPVFLFVPSISVLEKAASCFKDMNYRTAAVHAEDKVRKEKVQQFRDGQFDLLITTTILERGVTVPMVQTG
ILGAESPIFTESALVQIAGRTGRHKEHADGNVIYFHFGKTKSMIEARKHIKIMNELALKNKLID

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=706712 NLV76_RS18070 WP_254501643.1 3521138..3522532(-) (comFA) [Bacillus halotolerans strain MEC_B301]
ATGCAGACTAAGACATCAGAATCGAACAGCCTATTCTCTAAAGAACTGCAGCAGCAGCTTCAGGGCCGTCATCTGCTGAG
AACAGAAATCCCATTTTCTGACGAGATCATCGATTGGCATATCGAGCATGGTTATATATCTGCCGAGGGGTCTATATCAA
AAAATAAATGGGGATATAGATGCAATAGATGCGGTCAAAATGATCAACAGTATTTTTCTTCGTATCATTCATCAGGAGAA
GATAAAGTATACTGCCGCTCTTGTGTCATGATGGGCAGAGTGAGTGAGGATGTTTCTTTATATTCCTGGTGCAAGGAGGC
AGAGGCAAACTGGAAGCCTATAAAACTGACTTGGGATGGAAAGCTTTCAAGCGGACAGCAAAAGGCCGCTGACGTCTTAA
TTGAAGCAATTTCGAAGCAAGAAGAGCTCCTTATTTGGGCTGTTTGCGGCGCAGGTAAAACTGAATTATTATTCCCGGGT
ATAGAATTGGCATTAAATTTAAGACTGCGTGTTTGTATTGCAACCCCGCGCACCGATGTTGTATTAGAGCTTGCTCCGAG
ACTGAATGCTGCATTTCAGGGTGCTGATATTTCAGGTCTATACGGAGGAAGTGATGACAAAGGGCGTTTATCTCCGCTTA
TGATTTCCACAACCCATCAGCTTTTGCGCTATAAAGACGCATTCGACGTCATGATCGTTGATGAAGTGGATGCTTTTCCA
TATTCCGCTGATCATACTCTTCAATTCGCTGTTCAAAAAGCGAGAAAGAAAAACAGCACTCTTGTTTATCTAAGCGCAAC
ACCTCCTAAAGAATTAAAAAGAAAAACATATAAAGGTGAGTTAGAATCCGTTCGCATACCGGCCAGATACCATCGGAAAC
CATTGCCTGAACCGCGTTTTCAGTGGTGCGGAAACTGGAAAAAGAAATTAACCCGAAACAAAATCCCAAATGCGGTAAAA
ATATGGATAGAACAGCATGTGAAAGAAGGAAGGCCCGTTTTTTTATTTGTTCCTTCCATTTCTGTTTTGGAAAAGGCTGC
TTCTTGTTTTAAAGATATGAATTATCGAACAGCGGCTGTACATGCGGAAGATAAGGTCAGAAAAGAAAAAGTGCAGCAAT
TTCGAGACGGTCAGTTTGATCTGTTAATCACAACAACAATATTGGAAAGAGGTGTCACAGTTCCTATGGTCCAAACAGGC
ATCTTAGGGGCAGAATCGCCCATCTTTACGGAAAGCGCGCTTGTGCAAATCGCGGGAAGGACAGGACGGCATAAAGAACA
TGCAGACGGCAATGTCATTTATTTTCACTTCGGAAAAACAAAGAGTATGATAGAGGCAAGAAAGCATATAAAAATAATGA
ATGAATTGGCTCTAAAAAATAAATTGATAGACTAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(325-424)

Type III restriction enzyme, res subunit (ResIII)

(121-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

83.843

98.707

0.828