Detailed information
Bioinformatically predicted
Overview
| Name | scnR | Type | Regulator |
| Locus tag | H7677_RS07540 | Genome accession | NZ_AP023391 |
| Coordinates | 1540212..1540862 (-) | Length | 216 a.a. |
| NCBI ID | WP_023371212.1 | Uniprot ID | - |
| Organism | Streptococcus suis strain DAT299 | ||
| Function | regulate comX expression (predicted from homology) Competence regulation |
||
Genomic Context
Location: 1535212..1545862
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H7677_RS07525 (DAT299_14470) | - | 1536712..1537620 (+) | 909 | WP_184493285.1 | neutral zinc metallopeptidase | - |
| H7677_RS07530 (DAT299_14480) | - | 1537829..1538380 (-) | 552 | WP_184493287.1 | isoprenylcysteine carboxyl methyltransferase family protein | - |
| H7677_RS07535 (DAT299_14490) | - | 1538822..1540210 (-) | 1389 | WP_184493289.1 | sensor histidine kinase | - |
| H7677_RS07540 (DAT299_14500) | scnR | 1540212..1540862 (-) | 651 | WP_023371212.1 | response regulator transcription factor | Regulator |
| H7677_RS07545 (DAT299_14510) | - | 1541094..1541795 (+) | 702 | WP_184493291.1 | CPBP family intramembrane glutamic endopeptidase | - |
| H7677_RS07550 | - | 1542119..1543375 (+) | 1257 | WP_184493143.1 | ISL3 family transposase | - |
Sequence
Protein
Download Length: 216 a.a. Molecular weight: 24742.85 Da Isoelectric Point: 4.7792
>NTDB_id=70671 H7677_RS07540 WP_023371212.1 1540212..1540862(-) (scnR) [Streptococcus suis strain DAT299]
MSRILVVEDDIVISQVVCEFLKEHGYQVESVFDGKVALERFQEEQFDLIVLDIMIPSMTGLEVLKEIRKTSQIPILMLTA
MGDEYTQLISFNQIISDYVVKPFSPTILVKRIENILRGKGDTDSIEIGTILIQPTSGAVYMEEEEVQLTKKEYEVLLYLA
KRRGKIVSRDNLMMGIWGYTELDSRVLDNHIKNIRKKLPSLPLKTVVGRGYQIEDT
MSRILVVEDDIVISQVVCEFLKEHGYQVESVFDGKVALERFQEEQFDLIVLDIMIPSMTGLEVLKEIRKTSQIPILMLTA
MGDEYTQLISFNQIISDYVVKPFSPTILVKRIENILRGKGDTDSIEIGTILIQPTSGAVYMEEEEVQLTKKEYEVLLYLA
KRRGKIVSRDNLMMGIWGYTELDSRVLDNHIKNIRKKLPSLPLKTVVGRGYQIEDT
Nucleotide
Download Length: 651 bp
>NTDB_id=70671 H7677_RS07540 WP_023371212.1 1540212..1540862(-) (scnR) [Streptococcus suis strain DAT299]
ATGTCAAGGATCTTGGTTGTCGAGGATGACATAGTTATTAGTCAAGTTGTTTGTGAGTTTTTAAAAGAACATGGTTATCA
GGTAGAATCTGTTTTTGATGGAAAGGTTGCTTTAGAAAGGTTTCAAGAAGAACAATTCGATTTAATTGTTTTAGATATCA
TGATTCCGTCTATGACAGGTTTGGAAGTACTGAAGGAAATTCGCAAAACTTCTCAGATTCCAATTTTGATGCTGACAGCC
ATGGGTGACGAATATACACAGCTTATTAGTTTTAATCAGATTATAAGTGATTATGTTGTTAAACCATTTTCACCAACTAT
ATTGGTAAAACGGATTGAGAATATTTTGAGAGGAAAAGGAGATACAGATAGCATTGAGATAGGAACAATTCTTATTCAAC
CAACTAGCGGGGCAGTTTATATGGAAGAAGAAGAAGTTCAATTGACGAAAAAAGAATATGAAGTTTTACTATATTTAGCT
AAACGACGTGGGAAAATTGTTAGTCGTGATAACTTGATGATGGGAATATGGGGATATACGGAATTGGATAGTCGTGTCTT
AGATAATCATATCAAGAATATCCGTAAGAAATTGCCGTCACTTCCTTTGAAGACAGTAGTTGGTCGTGGTTATCAAATAG
AGGATACTTGA
ATGTCAAGGATCTTGGTTGTCGAGGATGACATAGTTATTAGTCAAGTTGTTTGTGAGTTTTTAAAAGAACATGGTTATCA
GGTAGAATCTGTTTTTGATGGAAAGGTTGCTTTAGAAAGGTTTCAAGAAGAACAATTCGATTTAATTGTTTTAGATATCA
TGATTCCGTCTATGACAGGTTTGGAAGTACTGAAGGAAATTCGCAAAACTTCTCAGATTCCAATTTTGATGCTGACAGCC
ATGGGTGACGAATATACACAGCTTATTAGTTTTAATCAGATTATAAGTGATTATGTTGTTAAACCATTTTCACCAACTAT
ATTGGTAAAACGGATTGAGAATATTTTGAGAGGAAAAGGAGATACAGATAGCATTGAGATAGGAACAATTCTTATTCAAC
CAACTAGCGGGGCAGTTTATATGGAAGAAGAAGAAGTTCAATTGACGAAAAAAGAATATGAAGTTTTACTATATTTAGCT
AAACGACGTGGGAAAATTGTTAGTCGTGATAACTTGATGATGGGAATATGGGGATATACGGAATTGGATAGTCGTGTCTT
AGATAATCATATCAAGAATATCCGTAAGAAATTGCCGTCACTTCCTTTGAAGACAGTAGTTGGTCGTGGTTATCAAATAG
AGGATACTTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| scnR | Streptococcus mutans UA159 |
37.838 |
100 |
0.389 |
| micA | Streptococcus pneumoniae Cp1015 |
36.889 |
100 |
0.384 |
| vicR | Streptococcus mutans UA159 |
36.283 |
100 |
0.38 |