Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   NLV76_RS16100 Genome accession   NZ_CP100752
Coordinates   3121441..3122085 (-) Length   214 a.a.
NCBI ID   WP_254501360.1    Uniprot ID   -
Organism   Bacillus halotolerans strain MEC_B301     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3116441..3127085
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NLV76_RS16065 (NLV76_16065) - 3117634..3118065 (+) 432 WP_254501357.1 Na(+)/H(+) antiporter subunit B -
  NLV76_RS16070 (NLV76_16070) - 3118065..3118406 (+) 342 WP_044158938.1 Na(+)/H(+) antiporter subunit C -
  NLV76_RS16075 (NLV76_16075) - 3118399..3119880 (+) 1482 WP_059292645.1 Na+/H+ antiporter subunit D -
  NLV76_RS16080 (NLV76_16080) - 3119886..3120362 (+) 477 WP_254501358.1 Na+/H+ antiporter subunit E -
  NLV76_RS16085 (NLV76_16085) - 3120362..3120646 (+) 285 WP_024122677.1 Na(+)/H(+) antiporter subunit F1 -
  NLV76_RS16090 (NLV76_16090) mnhG 3120630..3121004 (+) 375 WP_254501359.1 monovalent cation/H(+) antiporter subunit G -
  NLV76_RS16095 (NLV76_16095) - 3121043..3121423 (-) 381 WP_044158943.1 hotdog fold thioesterase -
  NLV76_RS16100 (NLV76_16100) comA 3121441..3122085 (-) 645 WP_254501360.1 two-component system response regulator ComA Regulator
  NLV76_RS16105 (NLV76_16105) comP 3122166..3124472 (-) 2307 WP_254501361.1 histidine kinase Regulator
  NLV76_RS16110 (NLV76_16110) comX 3124488..3124709 (-) 222 WP_059292642.1 competence pheromone ComX -
  NLV76_RS16115 (NLV76_16115) - 3124706..3125575 (-) 870 WP_254501363.1 polyprenyl synthetase family protein -
  NLV76_RS16120 (NLV76_16120) degQ 3125760..3125900 (-) 141 WP_254501364.1 degradation enzyme regulation protein DegQ Regulator
  NLV76_RS16125 (NLV76_16125) - 3126361..3126729 (+) 369 WP_254501365.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24095.39 Da        Isoelectric Point: 4.6730

>NTDB_id=706706 NLV76_RS16100 WP_254501360.1 3121441..3122085(-) (comA) [Bacillus halotolerans strain MEC_B301]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIHQHDFSSYDLILMDLNLGGDVNGMEVSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGDILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=706706 NLV76_RS16100 WP_254501360.1 3121441..3122085(-) (comA) [Bacillus halotolerans strain MEC_B301]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCCAGTGAACAGTTCATACACCAGCATGATTTCTCATCATATGATCTCATCTTAA
TGGATTTGAACTTAGGCGGCGATGTCAATGGGATGGAGGTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTATATACCGGTTATGAGGTCGAGGATTATTTTGAGGAAGCGATTCGTGCGGGTCTGCACGGCGCCATCAGCAAAAC
CGAATCAAAGGAAAAGATCACCCAATACATATATCACGTGCTCAACGGAGACATTTTAGTCGATTTCGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCCCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCCAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAAGGTTTTACCAACCAAGAAATTGCAGATGCGCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCCTGACGTCGATTTTCAACAAGCTTAATGTCGGTTCCAGAACGGAAGCGGTGTTGATTGCAAAATCAGACGGTGTGC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

98.131

100

0.981