Detailed information    

insolico Bioinformatically predicted

Overview

Name   subA/fin   Type   Machinery gene
Locus tag   PF976_RS00140 Genome accession   NZ_CP116011
Coordinates   21324..21554 (+) Length   76 a.a.
NCBI ID   WP_013350764.1    Uniprot ID   A0A9P1JE37
Organism   Bacillus amyloliquefaciens strain SRCM124317     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 16324..26554
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PF976_RS00110 (PF976_00110) ridA 16513..16893 (+) 381 WP_004264663.1 2-iminobutanoate/2-iminopropanoate deaminase -
  PF976_RS00115 (PF976_00115) spoVG 17089..17382 (+) 294 WP_004264660.1 septation regulator SpoVG -
  PF976_RS00120 (PF976_00120) glmU 17573..18943 (+) 1371 WP_013350760.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  PF976_RS00125 (PF976_00125) - 18965..19918 (+) 954 WP_013350761.1 ribose-phosphate diphosphokinase -
  PF976_RS00130 (PF976_00130) - 20003..20611 (+) 609 WP_013350762.1 50S ribosomal protein L25/general stress protein Ctc -
  PF976_RS00135 (PF976_00135) pth 20696..21262 (+) 567 WP_013350763.1 aminoacyl-tRNA hydrolase -
  PF976_RS00140 (PF976_00140) subA/fin 21324..21554 (+) 231 WP_013350764.1 anti-sigma-F factor Fin family protein Machinery gene
  PF976_RS00145 (PF976_00145) mfd 21625..25158 (+) 3534 WP_013350765.1 transcription-repair coupling factor -
  PF976_RS00150 (PF976_00150) spoVT 25295..25831 (+) 537 WP_013350766.1 stage V sporulation protein T -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 8893.91 Da        Isoelectric Point: 5.8002

>NTDB_id=706684 PF976_RS00140 WP_013350764.1 21324..21554(+) (subA/fin) [Bacillus amyloliquefaciens strain SRCM124317]
MALHYFCRHCGIKVGSLEYTTVPTQSLGFQHLTNEERNDMISYKDNGDLHVLTICEDCQEALERNPHYHEHNTFIQ

Nucleotide


Download         Length: 231 bp        

>NTDB_id=706684 PF976_RS00140 WP_013350764.1 21324..21554(+) (subA/fin) [Bacillus amyloliquefaciens strain SRCM124317]
ATGGCTTTGCATTATTTCTGCCGCCACTGCGGTATTAAGGTAGGGAGCCTGGAATATACGACGGTGCCGACACAGTCACT
TGGATTTCAGCACTTAACAAATGAGGAAAGAAACGATATGATTTCATATAAAGACAATGGAGATCTCCATGTTCTTACAA
TTTGTGAAGACTGCCAAGAGGCGCTGGAACGGAATCCGCACTACCATGAACACAACACATTTATTCAATAA

Domains

Predicted by InterProScan.

Anti-sigma-F factor Fin (Fin)

(1-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9P1JE37

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  subA/fin Bacillus subtilis subsp. subtilis str. 168

84.211

100

0.842