Detailed information    

insolico Bioinformatically predicted

Overview


Name   braR   Type   Regulator
Locus tag   H7677_RS07215 Genome accession   NZ_AP023391
Coordinates   1473359..1474042 (-) Length   227 a.a.
NCBI ID   WP_002936735.1    Uniprot ID   -
Organism   Streptococcus suis strain DAT299     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context


Location: 1468359..1479042
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7677_RS07190 (DAT299_13820) - 1468663..1468980 (-) 318 WP_024384973.1 PadR family transcriptional regulator -
  H7677_RS07195 (DAT299_13830) - 1468977..1469141 (-) 165 WP_044681951.1 hypothetical protein -
  H7677_RS07200 (DAT299_13840) - 1469509..1471518 (-) 2010 WP_184493251.1 ABC transporter permease -
  H7677_RS07205 (DAT299_13850) - 1471520..1472278 (-) 759 WP_024418785.1 ABC transporter ATP-binding protein -
  H7677_RS07210 (DAT299_13860) - 1472374..1473366 (-) 993 WP_184493253.1 sensor histidine kinase -
  H7677_RS07215 (DAT299_13870) braR 1473359..1474042 (-) 684 WP_002936735.1 response regulator transcription factor Regulator
  H7677_RS07220 (DAT299_13880) - 1474212..1475381 (+) 1170 WP_184493255.1 DUF2974 domain-containing protein -
  H7677_RS07225 (DAT299_13890) - 1475396..1476520 (-) 1125 WP_184493257.1 aminotransferase -

Sequence


Protein


Download         Length: 227 a.a.        Molecular weight: 26523.77 Da        Isoelectric Point: 4.6132

>NTDB_id=70667 H7677_RS07215 WP_002936735.1 1473359..1474042(-) (braR) [Streptococcus suis strain DAT299]
MQKILLIEDDKTISQLVAKNLINWGYQVQEVKDFQMVLEQMEEFQPHLILLDIGLPFFNGYYWCQEIRKTSRVPIMFLSS
HDQPMDIVMAINMGADDYVTKPFEMTVLLAKIQGLLRRTYDFVGEQSLLWFEEISLDLKTMQVSYGQVVEELTRNEFQIL
RVLFEHGKEVVSREELMRELWNSDIFVDDNTLSVNIARLRKKLAELGLPDVIATKKGVGYGLVWTHE

Nucleotide


Download         Length: 684 bp        

>NTDB_id=70667 H7677_RS07215 WP_002936735.1 1473359..1474042(-) (braR) [Streptococcus suis strain DAT299]
ATGCAGAAAATTCTTCTTATCGAGGATGATAAAACGATTAGCCAACTAGTTGCTAAAAACTTGATAAACTGGGGTTACCA
GGTGCAAGAGGTCAAGGATTTTCAGATGGTTTTGGAACAGATGGAAGAGTTTCAGCCCCATTTGATTTTACTGGATATTG
GCCTGCCGTTTTTCAATGGCTATTACTGGTGTCAGGAAATTCGCAAGACATCCCGTGTGCCCATTATGTTTCTGTCTTCC
CATGACCAGCCAATGGATATTGTTATGGCGATCAATATGGGGGCGGATGACTATGTGACCAAGCCCTTTGAAATGACGGT
TCTCCTGGCCAAAATACAGGGTCTTCTCAGAAGAACCTATGACTTTGTCGGAGAACAAAGTTTACTCTGGTTTGAGGAGA
TTTCCCTAGACCTAAAGACCATGCAGGTGTCCTATGGACAGGTTGTGGAAGAGCTGACACGAAATGAATTTCAGATTTTA
CGCGTTTTATTTGAACATGGCAAGGAAGTGGTCAGCCGTGAGGAGCTGATGAGAGAACTCTGGAACAGTGATATTTTTGT
GGATGACAATACTTTGTCGGTTAACATTGCTCGCCTGCGTAAAAAGTTGGCAGAACTTGGTCTGCCAGATGTGATTGCGA
CCAAGAAAGGAGTAGGCTACGGCCTGGTGTGGACACATGAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

48.165

96.035

0.463

  vicR Streptococcus mutans UA159

39.13

100

0.396

  micA Streptococcus pneumoniae Cp1015

37.991

100

0.383


Multiple sequence alignment