Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   OYT1_RS11625 Genome accession   NZ_AP018738
Coordinates   2335495..2336880 (+) Length   461 a.a.
NCBI ID   WP_062626667.1    Uniprot ID   -
Organism   Ferriphaselus amnicola strain OYT1     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2330495..2341880
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OYT1_RS11595 (OYT1_ch2371) - 2330774..2332408 (+) 1635 WP_062626673.1 peptide chain release factor 3 -
  OYT1_RS11600 (OYT1_ch2372) - 2332405..2332623 (+) 219 WP_062626672.1 RNA-binding S4 domain-containing protein -
  OYT1_RS11605 (OYT1_ch2373) arfB 2332627..2333040 (+) 414 WP_062626671.1 alternative ribosome rescue aminoacyl-tRNA hydrolase ArfB -
  OYT1_RS11610 (OYT1_ch2374) - 2333043..2333588 (+) 546 WP_062626670.1 YaeQ family protein -
  OYT1_RS11615 (OYT1_ch2375) - 2333668..2333895 (+) 228 WP_062626669.1 PP0621 family protein -
  OYT1_RS11620 (OYT1_ch2376) - 2333898..2335505 (+) 1608 WP_062626668.1 nitrogen regulation protein NR(II) -
  OYT1_RS11625 (OYT1_ch2377) pilR 2335495..2336880 (+) 1386 WP_062626667.1 sigma-54 dependent transcriptional regulator Regulator
  OYT1_RS11630 (OYT1_ch2378) ampD 2336870..2337406 (+) 537 WP_062626666.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  OYT1_RS11635 (OYT1_ch2379) - 2337585..2340440 (+) 2856 WP_062626665.1 ribonucleoside-diphosphate reductase subunit alpha -
  OYT1_RS11640 (OYT1_ch2380) - 2340546..2341688 (+) 1143 WP_062626664.1 ribonucleotide-diphosphate reductase subunit beta -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 50761.89 Da        Isoelectric Point: 5.1738

>NTDB_id=70632 OYT1_RS11625 WP_062626667.1 2335495..2336880(+) (pilR) [Ferriphaselus amnicola strain OYT1]
MSNERRQTSNTAARVLLVDDEPDILELLELALLRMGLEVDRADGVHAALDCLKHNDYDLCLTDMRMQDGEGLDIVRHITA
QNLDLPIAVITAHGNMESAITALKAGAFDYLSKPVSLDQLRALVKSAIHVPKPAPGKTEQSSDERGLLGHAPAMQKVRDL
IGRVARSQAPVHICGESGSGKELAARLIVEQSPRREQTFVPVNCGAIPENLMESEFFGYRKGAFTGAEQDRDGFFQAANG
GTLFLDEVADLPLAMQVKLLRAIQEKKVRKVGATQEEAVDVRIISATHNDLAQRVQEGKFRQDLYYRLNVINLTMPPLRE
LRDDIPEIAQRLLLRLRGDSTVTFAPDALSTLGAYAFPGNVRELENIIERALALCDGVAIHVDDLQLTPSEDETTGTALA
ADGAVPLPDYLDQVERNEILKALGRTRFNRTAAARMLGVTFRTLRYRMERLGIKGADKDEG

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=70632 OYT1_RS11625 WP_062626667.1 2335495..2336880(+) (pilR) [Ferriphaselus amnicola strain OYT1]
ATGAGCAATGAGCGACGCCAGACCAGCAACACCGCCGCCCGCGTGCTGCTGGTGGACGACGAGCCAGACATCCTTGAGTT
GCTTGAGTTAGCTTTGCTACGGATGGGGCTGGAAGTGGATCGCGCAGATGGCGTGCATGCCGCACTGGACTGTTTAAAGC
ACAACGACTATGACTTGTGCCTGACCGACATGCGGATGCAGGACGGCGAAGGGCTGGACATCGTACGTCACATCACGGCA
CAGAATCTAGACTTGCCCATCGCCGTCATCACTGCTCACGGCAATATGGAAAGTGCCATCACGGCACTCAAGGCTGGCGC
ATTCGACTACCTGTCCAAACCGGTGTCGCTAGATCAGTTACGTGCGCTGGTCAAATCCGCCATCCACGTCCCTAAACCCG
CACCCGGAAAAACCGAACAAAGCAGCGACGAACGCGGCCTGCTCGGACATGCGCCCGCGATGCAAAAGGTGCGTGATCTG
ATCGGCCGCGTGGCGCGCAGTCAGGCTCCGGTGCATATCTGCGGTGAGTCCGGCAGCGGCAAGGAGCTGGCGGCACGTTT
AATCGTGGAGCAAAGTCCCCGCCGCGAGCAGACGTTCGTGCCGGTCAACTGCGGTGCCATCCCCGAGAATCTGATGGAAA
GCGAATTCTTCGGTTACCGCAAGGGTGCGTTCACCGGCGCAGAGCAGGATCGCGACGGATTTTTCCAAGCGGCCAACGGC
GGCACGCTGTTCCTCGACGAAGTGGCCGATCTGCCGCTGGCGATGCAGGTCAAGTTGCTGCGCGCCATTCAGGAAAAGAA
GGTGCGCAAGGTCGGTGCGACGCAGGAAGAGGCGGTGGACGTGCGCATCATCAGTGCCACCCACAACGACCTCGCCCAAC
GCGTGCAGGAAGGCAAGTTCCGCCAAGACCTGTATTACCGGCTGAATGTCATCAATCTAACGATGCCGCCGCTGCGCGAG
CTGCGCGATGACATCCCAGAAATCGCCCAGCGCTTGCTGCTGCGACTGCGCGGCGACTCGACTGTGACTTTCGCTCCAGA
TGCGCTGAGCACACTCGGCGCGTATGCTTTCCCCGGCAATGTGCGCGAACTGGAGAACATCATCGAACGTGCGCTGGCAT
TGTGCGACGGCGTAGCCATCCATGTGGATGATCTACAACTCACGCCCAGCGAGGACGAAACCACCGGCACAGCTCTCGCC
GCCGACGGTGCCGTGCCGTTGCCAGACTACCTCGACCAAGTCGAACGCAACGAAATCCTCAAGGCTTTAGGACGCACGCG
TTTCAATCGCACGGCGGCTGCGCGAATGCTAGGCGTGACATTCCGCACCCTGCGCTATCGCATGGAGCGGCTCGGCATCA
AGGGGGCGGACAAAGATGAAGGCTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(15-124)

Sigma-54 interaction domain (Sigma54_activat)

(148-313)

Bacterial regulatory protein, Fis family (HTH_8)

(411-450)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

57.562

96.095

0.553
  pilR Acinetobacter baumannii strain A118

45.376

100

0.458

Multiple sequence alignment