Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilL   Type   Machinery gene
Locus tag   OK782_RS02355 Genome accession   NZ_CP115904
Coordinates   450101..450574 (+) Length   157 a.a.
NCBI ID   WP_025455870.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain MS11 HL-1-22     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 445101..455574
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OK782_RS02330 (OK782_02330) dnaB 445708..447114 (+) 1407 WP_003694974.1 replicative DNA helicase -
  OK782_RS02335 (OK782_02335) pilH 447269..447931 (+) 663 WP_003687912.1 GspH/FimT family pseudopilin Machinery gene
  OK782_RS02340 (OK782_02340) pilV/pilI 447963..448571 (+) 609 WP_003694976.1 type IV pilus modification protein PilV Regulator
  OK782_RS02345 (OK782_02345) pilJ 448568..449509 (+) 942 WP_003694978.1 PilW family protein Machinery gene
  OK782_RS02350 (OK782_02350) pilK 449488..450099 (+) 612 WP_003687918.1 pilus assembly PilX family protein Machinery gene
  OK782_RS02355 (OK782_02355) pilL 450101..450574 (+) 474 WP_025455870.1 PilX family type IV pilin Machinery gene
  OK782_RS02360 (OK782_02360) - 450644..450952 (-) 309 WP_010951048.1 AzlD family protein -
  OK782_RS02365 (OK782_02365) - 450949..451656 (-) 708 Protein_462 AzlC family ABC transporter permease -
  OK782_RS02370 (OK782_02370) dut 451822..452274 (+) 453 WP_003687923.1 dUTP diphosphatase -
  OK782_RS02375 (OK782_02375) dapC 452352..453539 (+) 1188 WP_003687924.1 succinyldiaminopimelate transaminase -
  OK782_RS02380 (OK782_02380) yaaA 453850..454629 (+) 780 WP_003694987.1 peroxide stress protein YaaA -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17555.36 Da        Isoelectric Point: 9.4067

>NTDB_id=706230 OK782_RS02355 WP_025455870.1 450101..450574(+) (pilL) [Neisseria gonorrhoeae strain MS11 HL-1-22]
MEQKGFTLIEMMIVVAILGIISVIAIPSYQSYIEKGYQSQLYTEMVGINNVLKQFILKNPQDDNDILKSKLEIFVSGYKM
NPKIAKKYSVSVRFVDAEKPRAYRLVGVPNAGTGYTLSVWMNSVGDGYKCRDATSAQVYLETLSANTGCEAFSNRKK

Nucleotide


Download         Length: 474 bp        

>NTDB_id=706230 OK782_RS02355 WP_025455870.1 450101..450574(+) (pilL) [Neisseria gonorrhoeae strain MS11 HL-1-22]
ATGGAACAAAAAGGGTTTACATTGATTGAGATGATGATAGTTGTCGCGATACTCGGCATCATCAGCGTCATTGCCATACC
TTCTTATCAGAGTTATATTGAAAAAGGCTATCAGTCCCAGCTTTATACGGAGATGGTCGGTATCAACAATGTTCTCAAAC
AGTTTATTTTGAAAAATCCCCAGGACGATAATGATATCCTCAAGAGCAAACTGGAAATATTTGTCTCAGGCTATAAGATG
AATCCGAAAATTGCCAAAAAATATAGTGTTTCGGTAAGGTTTGTCGATGCGGAAAAACCAAGGGCATACAGGTTGGTCGG
TGTTCCGAACGCGGGGACGGGTTATACTTTGTCGGTATGGATGAACAGCGTGGGCGACGGATACAAATGCCGTGATGCCA
CTTCTGCCCAGGTCTATTTGGAGACCTTGTCCGCAAATACCGGCTGTGAAGCTTTCTCTAATCGTAAAAAATAG

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(3-25)

Minor type IV pilin, PilX (Pilin_PilX)

(31-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilL Neisseria gonorrhoeae MS11

100

100

1
  pilX Neisseria meningitidis 8013

85.987

100

0.86