Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   OK782_RS02335 Genome accession   NZ_CP115904
Coordinates   447269..447931 (+) Length   220 a.a.
NCBI ID   WP_003687912.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain MS11 HL-1-22     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 442269..452931
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OK782_RS02310 (OK782_02310) cysT 442544..443380 (-) 837 WP_003687907.1 sulfate ABC transporter permease subunit CysT -
  OK782_RS02315 (OK782_02315) - 443561..443893 (+) 333 WP_003687908.1 hypothetical protein -
  OK782_RS02320 (OK782_02320) - 444224..444733 (+) 510 WP_003687909.1 isoprenylcysteine carboxyl methyltransferase family protein -
  OK782_RS02325 (OK782_02325) - 444963..445544 (-) 582 WP_003687910.1 superoxide dismutase -
  OK782_RS02330 (OK782_02330) dnaB 445708..447114 (+) 1407 WP_003694974.1 replicative DNA helicase -
  OK782_RS02335 (OK782_02335) pilH 447269..447931 (+) 663 WP_003687912.1 GspH/FimT family pseudopilin Machinery gene
  OK782_RS02340 (OK782_02340) pilV/pilI 447963..448571 (+) 609 WP_003694976.1 type IV pilus modification protein PilV Regulator
  OK782_RS02345 (OK782_02345) pilJ 448568..449509 (+) 942 WP_003694978.1 PilW family protein Machinery gene
  OK782_RS02350 (OK782_02350) pilK 449488..450099 (+) 612 WP_003687918.1 pilus assembly PilX family protein Machinery gene
  OK782_RS02355 (OK782_02355) pilL 450101..450574 (+) 474 WP_025455870.1 PilX family type IV pilin Machinery gene
  OK782_RS02360 (OK782_02360) - 450644..450952 (-) 309 WP_010951048.1 AzlD family protein -
  OK782_RS02365 (OK782_02365) - 450949..451656 (-) 708 Protein_462 AzlC family ABC transporter permease -
  OK782_RS02370 (OK782_02370) dut 451822..452274 (+) 453 WP_003687923.1 dUTP diphosphatase -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 24447.88 Da        Isoelectric Point: 9.6283

>NTDB_id=706226 OK782_RS02335 WP_003687912.1 447269..447931(+) (pilH) [Neisseria gonorrhoeae strain MS11 HL-1-22]
MCTRKQQGFTLTELLIVMAIAAIMATIALPNMSGWIASRRIASHAEQVANLLRFSRGEAVRLNLPVYICPVQVKKDGAPN
NRCDFSKKGRGMLAFGDKNGNKAYDNDTVDVFLRSVVLNDTDDSRINYAFNHIAFGSSQPTADRVVWTFNQNGTFGYLPD
QNLKDNSKFVYSDGYIQIVLTDARAVSDADKKFRSAVVLINSSGRVEVCRKNDTRAVCKH

Nucleotide


Download         Length: 663 bp        

>NTDB_id=706226 OK782_RS02335 WP_003687912.1 447269..447931(+) (pilH) [Neisseria gonorrhoeae strain MS11 HL-1-22]
ATGTGTACACGAAAACAACAAGGTTTCACGCTAACAGAGCTGCTCATCGTGATGGCCATTGCAGCCATTATGGCGACGAT
AGCCCTCCCCAATATGAGTGGGTGGATTGCATCACGCCGCATTGCCAGTCACGCGGAGCAGGTTGCCAACCTTTTGCGTT
TCTCCAGGGGCGAAGCCGTCCGGCTCAATCTCCCTGTCTATATCTGTCCTGTTCAAGTTAAAAAAGACGGTGCGCCCAAC
AATAGATGTGACTTCAGCAAGAAGGGGCGGGGAATGTTGGCTTTCGGCGACAAAAACGGCAATAAGGCATATGACAATGA
TACGGTAGATGTTTTCCTCCGCAGCGTGGTGTTGAATGATACCGACGACAGCCGGATTAATTATGCCTTCAACCATATCG
CTTTCGGTTCGTCTCAGCCGACCGCCGACCGTGTAGTTTGGACGTTCAACCAAAACGGGACATTCGGCTATTTGCCCGAT
CAGAATCTCAAGGATAATTCCAAATTTGTTTATTCTGACGGTTATATCCAAATCGTGCTGACAGATGCGAGAGCAGTTTC
AGATGCCGATAAGAAATTCCGTTCGGCGGTGGTTTTGATTAACAGCAGCGGCAGGGTCGAAGTTTGTCGTAAAAACGATA
CGCGCGCCGTATGCAAACATTAA

Domains

Predicted by InterProScan.

Type II transport protein GspH (GspH)

(44-204)

Prokaryotic N-terminal methylation motif (N_methyl)

(4-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

100

100

1