Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   NLL86_RS20050 Genome accession   NZ_CP100660
Coordinates   4350884..4353100 (-) Length   738 a.a.
NCBI ID   WP_254480913.1    Uniprot ID   -
Organism   Pseudomonas fluorescens strain ZL22     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4345884..4358100
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NLL86_RS20015 (NLL86_20015) murB 4346141..4347160 (-) 1020 WP_254480909.1 UDP-N-acetylmuramate dehydrogenase -
  NLL86_RS20020 (NLL86_20020) - 4347157..4347621 (-) 465 WP_254480910.1 low molecular weight protein-tyrosine-phosphatase -
  NLL86_RS20025 (NLL86_20025) kdsB 4347621..4348385 (-) 765 WP_254480911.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  NLL86_RS20030 (NLL86_20030) - 4348382..4348567 (-) 186 WP_003247142.1 Trm112 family protein -
  NLL86_RS20035 (NLL86_20035) lpxK 4348611..4349612 (-) 1002 WP_254480912.1 tetraacyldisaccharide 4'-kinase -
  NLL86_RS20040 (NLL86_20040) - 4349612..4350046 (-) 435 WP_085675533.1 biopolymer transporter ExbD -
  NLL86_RS20045 (NLL86_20045) exbB 4350043..4350678 (-) 636 WP_016391244.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  NLL86_RS20050 (NLL86_20050) comA 4350884..4353100 (-) 2217 WP_254480913.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  NLL86_RS20055 (NLL86_20055) - 4353243..4353869 (+) 627 WP_254480914.1 DUF2062 domain-containing protein -
  NLL86_RS20060 (NLL86_20060) - 4353753..4354532 (-) 780 WP_176507639.1 ABC transporter permease -
  NLL86_RS20065 (NLL86_20065) - 4354529..4355461 (-) 933 WP_254480915.1 ABC transporter ATP-binding protein -
  NLL86_RS20070 (NLL86_20070) - 4355606..4356229 (-) 624 WP_254480916.1 glutathione S-transferase -

Sequence

Protein


Download         Length: 738 a.a.        Molecular weight: 79705.66 Da        Isoelectric Point: 10.3615

>NTDB_id=706119 NLL86_RS20050 WP_254480913.1 4350884..4353100(-) (comA) [Pseudomonas fluorescens strain ZL22]
MRTGMFALALGLLCLGFLPALPSVGWLLLLSLGGLACFFTRLRPLGCFLLGLCWACWSAQQALDDRLAVGLDGRTLWLEG
QVVGLPTRTAQGVRFELAQAHSRRAGLPRRLQLSWFEGPAIRAGEHWRVAVTLQRPAGLLNPHGPDREAQLLARRIGATG
TVKAGQRVHAVAPGWRDALRERLLKVDAQGQEAALVALVLGDGAGLAREQWQALQATGTVHLLVISGQHIGLVAGLLYAL
VAGLARWGIWPRGWPWLPWACGLALAAALGYGWLAGAGVPVQRACLMLAVVLLWRLRFRQLGAMLPLLLALNLVLLAEPL
AALLAGFWLSFAAVAILIYSFAARLGGWRPWQAWTRAQWVIAVGLLPVLMATGLPVSLSAPAANLLAVPWVSLAVLPLAL
LGTLLLPLAGIGEGLLWAAGGLLDMLFRLLDLMARWRPVWIPPALPVWAWLLVGLGALLLLLPRGVPLRGLGGVMLLALW
VPREPVPHGQVEVWQLDVGQGLAVLLRTQHHTLLYDAGPARGETDLGERVVLPTLRKLGVDRLDLMLVSHAHADHAGGAA
AILRSLPVERAIGGEALADVQLQPCASGEQWIWDGVHFSLWRWADGQSSNDRSCVLMVEAQGERMLLAGDMEAGAERAWL
TDTAAPGIDWLQAPHHGSRTSSSEAFIRATAPRGVLISRGRNNSFGHPHMQVVERYRRHGVVVYDTAVDGALRVVLGGQG
EVEGVRRQRRFWRDMGAG

Nucleotide


Download         Length: 2217 bp        

>NTDB_id=706119 NLL86_RS20050 WP_254480913.1 4350884..4353100(-) (comA) [Pseudomonas fluorescens strain ZL22]
ATGCGCACAGGGATGTTTGCGCTCGCGCTCGGGTTGTTGTGCCTGGGTTTTCTGCCCGCATTGCCGTCGGTCGGGTGGCT
GCTACTGCTGTCGCTGGGTGGTCTGGCCTGCTTTTTTACCAGGCTGCGGCCGCTGGGCTGCTTTCTGTTGGGGCTGTGCT
GGGCTTGCTGGTCGGCCCAGCAGGCGCTGGACGACCGCCTGGCAGTGGGCCTGGATGGCCGCACGCTATGGTTGGAAGGC
CAGGTTGTCGGGTTGCCGACACGTACCGCACAGGGCGTACGCTTCGAGCTGGCACAGGCGCATTCGCGCCGCGCCGGGCT
GCCTCGGCGCCTGCAACTGAGCTGGTTCGAAGGCCCGGCCATACGGGCCGGCGAGCATTGGCGCGTGGCGGTGACCTTGC
AGCGCCCGGCCGGGTTGCTGAACCCGCATGGCCCGGATCGCGAGGCGCAGCTGTTGGCCCGGCGCATCGGCGCCACGGGT
ACGGTCAAGGCGGGCCAGCGAGTGCACGCGGTGGCACCGGGGTGGCGGGATGCACTGCGCGAGCGCCTGCTGAAGGTCGA
TGCCCAGGGGCAGGAAGCAGCATTGGTCGCCTTGGTGCTCGGCGACGGGGCGGGCCTGGCCCGCGAGCAATGGCAAGCCT
TGCAGGCTACCGGCACGGTGCACTTGCTGGTGATTTCCGGGCAACACATCGGCTTGGTCGCGGGCTTGTTGTATGCCTTG
GTTGCGGGCCTGGCGCGCTGGGGCATCTGGCCGCGCGGGTGGCCGTGGTTGCCCTGGGCGTGCGGCCTGGCGCTGGCTGC
GGCGCTGGGCTACGGCTGGCTGGCCGGGGCGGGTGTGCCGGTGCAGCGTGCCTGTCTGATGCTGGCAGTGGTGTTGCTGT
GGCGCCTGCGTTTTCGCCAGCTGGGGGCGATGTTGCCGTTGTTGCTGGCGTTGAACCTGGTGTTGCTGGCCGAGCCGCTG
GCGGCGTTGCTCGCTGGTTTCTGGCTGTCGTTCGCGGCGGTGGCCATCCTCATCTACAGCTTTGCGGCGCGGCTTGGCGG
CTGGCGGCCCTGGCAGGCGTGGACGCGAGCCCAGTGGGTGATCGCCGTCGGCTTGCTTCCGGTGTTGATGGCCACGGGCT
TGCCGGTCAGCCTGAGTGCGCCTGCGGCAAACTTGCTGGCGGTGCCCTGGGTCAGCCTGGCGGTGTTGCCACTGGCATTG
CTCGGTACGCTGCTGCTGCCGCTGGCGGGCATTGGCGAGGGGCTGCTGTGGGCCGCAGGTGGCTTGCTGGATATGCTGTT
CCGCCTGTTGGACTTGATGGCAAGGTGGCGGCCGGTTTGGATACCGCCGGCCTTGCCGGTGTGGGCCTGGTTGCTGGTGG
GTTTGGGGGCGTTACTGTTGCTGTTGCCTCGCGGTGTGCCACTGCGTGGGCTGGGCGGGGTCATGCTGCTGGCCTTGTGG
GTGCCGAGGGAGCCGGTGCCGCATGGGCAGGTTGAAGTCTGGCAGCTGGACGTCGGTCAAGGCTTGGCGGTGCTGTTGCG
CACGCAGCATCACACCCTGCTTTACGACGCCGGGCCGGCCAGGGGCGAAACTGATCTGGGTGAGCGGGTGGTGTTGCCGA
CCCTGCGCAAGCTGGGGGTTGACCGCCTGGACCTGATGCTGGTGAGCCACGCCCATGCCGACCATGCGGGAGGCGCTGCG
GCAATCTTGCGCAGCCTGCCGGTCGAGCGGGCAATTGGCGGTGAAGCGCTGGCTGACGTGCAGTTGCAACCTTGTGCCAG
TGGCGAGCAATGGATATGGGACGGCGTGCATTTTTCGCTATGGCGCTGGGCGGACGGGCAAAGTAGTAACGACCGTTCCT
GCGTGCTGATGGTCGAGGCACAGGGCGAGCGGATGTTGCTGGCGGGGGACATGGAGGCAGGTGCCGAGCGGGCATGGCTG
ACGGATACCGCAGCGCCCGGTATCGATTGGCTGCAGGCGCCGCACCATGGCAGCCGTACCTCTTCAAGCGAGGCCTTCAT
CCGCGCCACGGCACCGCGCGGGGTGCTGATTTCGCGGGGACGCAACAACAGCTTCGGGCACCCGCATATGCAGGTGGTCG
AGCGTTATCGGCGGCATGGGGTGGTGGTGTATGACACGGCGGTGGACGGGGCTTTGCGGGTGGTGTTGGGTGGGCAAGGT
GAAGTTGAAGGTGTGCGCCGGCAGCGACGTTTCTGGCGCGATATGGGCGCTGGCTGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(198-464)

Domain of unknown function (DUF4131) (DUF4131)

(23-167)

Metallo-beta-lactamase superfamily (Lactamase_B)

(497-674)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

58.414

97.425

0.569
  comA Ralstonia pseudosolanacearum GMI1000

35.504

100

0.377