Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   NLL86_RS20045 Genome accession   NZ_CP100660
Coordinates   4350043..4350678 (-) Length   211 a.a.
NCBI ID   WP_016391244.1    Uniprot ID   -
Organism   Pseudomonas fluorescens strain ZL22     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4345043..4355678
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NLL86_RS20015 (NLL86_20015) murB 4346141..4347160 (-) 1020 WP_254480909.1 UDP-N-acetylmuramate dehydrogenase -
  NLL86_RS20020 (NLL86_20020) - 4347157..4347621 (-) 465 WP_254480910.1 low molecular weight protein-tyrosine-phosphatase -
  NLL86_RS20025 (NLL86_20025) kdsB 4347621..4348385 (-) 765 WP_254480911.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  NLL86_RS20030 (NLL86_20030) - 4348382..4348567 (-) 186 WP_003247142.1 Trm112 family protein -
  NLL86_RS20035 (NLL86_20035) lpxK 4348611..4349612 (-) 1002 WP_254480912.1 tetraacyldisaccharide 4'-kinase -
  NLL86_RS20040 (NLL86_20040) - 4349612..4350046 (-) 435 WP_085675533.1 biopolymer transporter ExbD -
  NLL86_RS20045 (NLL86_20045) exbB 4350043..4350678 (-) 636 WP_016391244.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  NLL86_RS20050 (NLL86_20050) comA 4350884..4353100 (-) 2217 WP_254480913.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  NLL86_RS20055 (NLL86_20055) - 4353243..4353869 (+) 627 WP_254480914.1 DUF2062 domain-containing protein -
  NLL86_RS20060 (NLL86_20060) - 4353753..4354532 (-) 780 WP_176507639.1 ABC transporter permease -
  NLL86_RS20065 (NLL86_20065) - 4354529..4355461 (-) 933 WP_254480915.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22845.14 Da        Isoelectric Point: 7.3616

>NTDB_id=706118 NLL86_RS20045 WP_016391244.1 4350043..4350678(-) (exbB) [Pseudomonas fluorescens strain ZL22]
MWELVKSGGWMMLPIILSSIAAMAIVVERLWTLRASRVTPPHLLGQVWMWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAASRVIHELERYISTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGSQMTANAAVLAGGISKALVTTA
AGLMVGIPAVFFHRFLLRRIDELVVGMEQEAIKLVEVIQGDREVEVAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=706118 NLL86_RS20045 WP_016391244.1 4350043..4350678(-) (exbB) [Pseudomonas fluorescens strain ZL22]
GTGTGGGAATTGGTCAAGTCCGGTGGTTGGATGATGCTGCCGATCATTCTGAGTTCCATCGCCGCCATGGCTATCGTCGT
CGAGCGCCTGTGGACCCTGCGCGCCAGCCGCGTTACCCCGCCGCACCTGCTGGGCCAGGTGTGGATGTGGATCAAGGACA
AGCAACTCACCAGTGACAAGCTCAAGGCCCTGCGCGCCGACTCGCCGCTCGGCGAAATCCTCGCGGCGGGCCTGGCCAAC
TCGCGCCATGGCCGCGAGATCATGAAAGAGTGCATCGAGGAAGCCGCCTCGCGCGTCATCCACGAGCTCGAGCGTTACAT
CAGCACCCTCGGCACCATCGCCGCCATGGCGCCGCTGCTCGGCCTGCTGGGCACCGTGCTGGGCATGATCGACATTTTCA
GCGCCTTCATGGGCTCGCAGATGACCGCCAATGCCGCCGTGCTGGCCGGTGGTATCTCCAAGGCCCTGGTCACCACCGCA
GCCGGCCTGATGGTCGGTATCCCAGCCGTGTTCTTCCACCGCTTCCTGCTGCGCCGCATCGATGAGCTGGTGGTGGGCAT
GGAGCAGGAGGCGATCAAGCTGGTCGAAGTCATCCAGGGCGACCGCGAAGTGGAAGTGGCTGGAGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

82.938

100

0.829