Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   NL778_RS07045 Genome accession   NZ_CP100652
Coordinates   1545585..1547798 (+) Length   737 a.a.
NCBI ID   WP_254467364.1    Uniprot ID   -
Organism   Pseudomonas putida strain HSM-C2     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1540585..1552798
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NL778_RS07025 (NL778_07025) - 1542468..1543091 (+) 624 WP_254467363.1 glutathione S-transferase -
  NL778_RS07030 (NL778_07030) - 1543224..1544156 (+) 933 WP_012313416.1 ABC transporter ATP-binding protein -
  NL778_RS07035 (NL778_07035) - 1544153..1544932 (+) 780 WP_012313417.1 ABC transporter permease -
  NL778_RS07040 (NL778_07040) - 1544816..1545442 (-) 627 WP_012313418.1 DUF2062 domain-containing protein -
  NL778_RS07045 (NL778_07045) comA 1545585..1547798 (+) 2214 WP_254467364.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  NL778_RS07050 (NL778_07050) exbB 1547910..1548545 (+) 636 WP_012313420.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  NL778_RS07055 (NL778_07055) - 1548542..1548976 (+) 435 WP_012313421.1 biopolymer transporter ExbD -
  NL778_RS07060 (NL778_07060) lpxK 1548976..1549986 (+) 1011 WP_012313422.1 tetraacyldisaccharide 4'-kinase -
  NL778_RS07065 (NL778_07065) - 1550031..1550216 (+) 186 WP_003247142.1 Trm112 family protein -
  NL778_RS07070 (NL778_07070) kdsB 1550213..1550977 (+) 765 WP_012313423.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  NL778_RS07075 (NL778_07075) - 1550977..1551441 (+) 465 WP_254467365.1 low molecular weight protein-tyrosine-phosphatase -
  NL778_RS07080 (NL778_07080) murB 1551438..1552457 (+) 1020 WP_254467366.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 737 a.a.        Molecular weight: 79653.56 Da        Isoelectric Point: 9.2877

>NTDB_id=706054 NL778_RS07045 WP_254467364.1 1545585..1547798(+) (comA) [Pseudomonas putida strain HSM-C2]
MRTGMFALALGLLCLGVLPELPSVGWLWLLLGGGLFCLCTRLWPLGCCVLGMCWACWSAQQALDDRLAPSLDGRTLWLEG
RVVGLPTNTLSGVRFELEQPRSRRAALPKRLQLHWFDGPPVRAGERWRLAATLQRPAGLLNPHGPDREAQLLAKRIGATG
TVKAGHVLDTGQPGWRDALRQRLLSVAAHGREAALVALVLGDGAGLAREDWQALQATGTVHLLVISGQHIGLVAGLLYAL
VAGLARWGLWPQALPWLPCACGLALGAALAYGWLAGAGVPVQRACLMLAVVLLWRLRFRHLGALFPLLLALIGVLVAEPL
APLLPGFWLSFAAVATLVYCFSSRLGRWRPWQGWTRAQWVIAIGLLPVLIATGLPVSLSAPLANLLAVPWISLAVLPLAL
LGTLLLPLAGVGEGLLWLAGGLLDVLFRLLAWVAHWRPAWLPPALPVWAWLMVCLGALLVLLPSGVPLRSLGGAMLLALW
VPREAVPQGQVEVWQLDVGQGLAVLLRTQNHSLLYDAGPARGDSDLGERVVLPTLHKLGVKRLDIMLISHAHADHAGGAP
AVYRGLPVVRVLGGEVLEDLALQPCASDEQWEWDGVRFSLWHWAQGQSSNDRSCVLLVEAQGERLLLAGDMEAGAERAWL
AAHATPRIDWLQSPHHGSRSSSTEAFIRATAPRGVLISRGRNNGFGHPHVQVIERYRRHGVAIHDTAVEGALRLVLGNHG
EVEGVRGQKRFWRGSVP

Nucleotide


Download         Length: 2214 bp        

>NTDB_id=706054 NL778_RS07045 WP_254467364.1 1545585..1547798(+) (comA) [Pseudomonas putida strain HSM-C2]
ATGCGCACAGGGATGTTTGCGCTGGCGCTCGGGCTGTTGTGCCTGGGCGTCCTTCCTGAATTGCCATCGGTCGGGTGGCT
GTGGCTGCTGCTCGGCGGGGGGCTGTTTTGCCTGTGCACACGCCTGTGGCCGCTGGGCTGCTGCGTGCTGGGTATGTGCT
GGGCTTGCTGGTCGGCGCAGCAGGCACTGGATGATCGCCTGGCCCCAAGCCTGGATGGCCGCACGCTGTGGCTGGAGGGC
AGGGTGGTCGGCTTGCCGACCAACACGCTGAGTGGTGTGCGCTTTGAGCTGGAGCAACCTCGCTCGCGCCGCGCTGCGTT
GCCCAAGCGCCTGCAATTGCATTGGTTCGATGGCCCGCCGGTGCGTGCTGGCGAGCGCTGGCGCCTGGCTGCTACCTTGC
AGCGCCCGGCCGGGCTGCTCAACCCTCATGGTCCGGACCGGGAGGCACAGTTGTTGGCCAAGCGCATCGGCGCCACTGGC
ACGGTCAAGGCCGGCCATGTGCTGGATACCGGGCAGCCGGGGTGGCGTGACGCACTGCGCCAGCGCTTGTTGAGCGTCGC
CGCGCATGGCCGGGAAGCAGCCCTTGTCGCATTGGTGCTCGGCGATGGCGCCGGCCTGGCCCGTGAGGACTGGCAAGCGC
TGCAGGCCACGGGCACGGTACACCTGTTGGTGATCTCGGGGCAGCACATCGGCCTGGTCGCCGGCCTGCTTTACGCCTTG
GTCGCGGGCTTGGCGCGCTGGGGCCTGTGGCCTCAGGCTCTACCTTGGTTGCCGTGTGCGTGTGGCCTGGCACTGGGTGC
GGCGCTGGCCTATGGCTGGCTGGCCGGTGCGGGGGTGCCGGTGCAGCGCGCCTGCCTGATGCTGGCGGTGGTTCTGCTCT
GGCGCCTGCGCTTTCGCCATCTTGGGGCGCTGTTTCCTTTGCTGCTGGCACTTATCGGGGTGCTGGTCGCCGAGCCCCTG
GCGCCGCTGCTGCCAGGGTTCTGGCTGTCGTTTGCGGCGGTGGCGACCCTGGTCTACTGCTTCAGTTCACGTCTGGGCCG
ATGGCGGCCCTGGCAAGGATGGACCCGCGCCCAGTGGGTGATCGCCATCGGCCTGCTGCCGGTACTGATTGCGACCGGTC
TGCCGGTCAGTCTGAGTGCGCCACTGGCCAACTTGCTGGCAGTGCCGTGGATCAGCCTCGCGGTATTGCCCTTGGCGCTG
CTTGGAACGTTGCTGCTGCCGTTGGCAGGGGTAGGTGAAGGTCTGTTGTGGTTGGCGGGCGGGCTGCTGGATGTCTTGTT
CCGGTTGCTGGCTTGGGTAGCGCATTGGCGCCCGGCATGGCTACCGCCTGCTTTGCCGGTCTGGGCCTGGCTGATGGTCT
GCCTGGGCGCGTTGCTGGTGCTGCTGCCGTCCGGTGTACCTCTGCGCAGCCTGGGCGGGGCCATGCTGCTGGCATTGTGG
GTGCCCAGGGAGGCTGTGCCGCAGGGGCAGGTGGAGGTCTGGCAGCTGGATGTCGGGCAGGGCTTGGCGGTATTGCTGCG
CACGCAAAATCACAGCCTGCTTTACGACGCCGGCCCGGCGCGGGGGGATAGTGATCTGGGTGAGCGGGTGGTGTTGCCGA
CCCTGCACAAGTTGGGCGTAAAGCGCTTGGACATCATGCTTATCAGTCATGCCCATGCCGACCATGCGGGTGGCGCGCCG
GCCGTCTACCGTGGGTTGCCGGTGGTACGTGTGCTGGGCGGCGAAGTGTTGGAGGACCTTGCACTGCAGCCTTGTGCCAG
TGATGAGCAGTGGGAATGGGATGGCGTGCGCTTTTCGCTGTGGCATTGGGCCCAGGGGCAGAGCAGCAACGATCGCTCTT
GCGTGCTGCTGGTCGAGGCACAGGGGGAGCGGCTGCTATTGGCAGGCGATATGGAGGCGGGGGCCGAGCGCGCATGGTTG
GCGGCCCACGCGACGCCTCGTATCGATTGGCTGCAGTCACCGCACCATGGCAGCCGTAGCTCCTCGACCGAGGCATTCAT
CCGCGCCACGGCGCCGCGCGGCGTGCTGATTTCGCGGGGGCGTAACAACGGTTTTGGGCATCCGCATGTGCAGGTGATCG
AGCGGTATCGGCGGCATGGGGTGGCCATTCACGATACGGCGGTAGAGGGGGCGTTGCGGTTGGTGTTGGGCAACCATGGC
GAGGTGGAGGGGGTGCGGGGGCAGAAACGCTTTTGGCGGGGCAGTGTGCCGTGA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(20-166)

Metallo-beta-lactamase superfamily (Lactamase_B)

(497-674)

Competence protein (Competence)

(198-462)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

58.357

97.422

0.569
  comA Ralstonia pseudosolanacearum GMI1000

33.842

100

0.361