Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   NL778_RS07050 Genome accession   NZ_CP100652
Coordinates   1547910..1548545 (+) Length   211 a.a.
NCBI ID   WP_012313420.1    Uniprot ID   -
Organism   Pseudomonas putida strain HSM-C2     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1542910..1553545
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NL778_RS07030 (NL778_07030) - 1543224..1544156 (+) 933 WP_012313416.1 ABC transporter ATP-binding protein -
  NL778_RS07035 (NL778_07035) - 1544153..1544932 (+) 780 WP_012313417.1 ABC transporter permease -
  NL778_RS07040 (NL778_07040) - 1544816..1545442 (-) 627 WP_012313418.1 DUF2062 domain-containing protein -
  NL778_RS07045 (NL778_07045) comA 1545585..1547798 (+) 2214 WP_254467364.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  NL778_RS07050 (NL778_07050) exbB 1547910..1548545 (+) 636 WP_012313420.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  NL778_RS07055 (NL778_07055) - 1548542..1548976 (+) 435 WP_012313421.1 biopolymer transporter ExbD -
  NL778_RS07060 (NL778_07060) lpxK 1548976..1549986 (+) 1011 WP_012313422.1 tetraacyldisaccharide 4'-kinase -
  NL778_RS07065 (NL778_07065) - 1550031..1550216 (+) 186 WP_003247142.1 Trm112 family protein -
  NL778_RS07070 (NL778_07070) kdsB 1550213..1550977 (+) 765 WP_012313423.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  NL778_RS07075 (NL778_07075) - 1550977..1551441 (+) 465 WP_254467365.1 low molecular weight protein-tyrosine-phosphatase -
  NL778_RS07080 (NL778_07080) murB 1551438..1552457 (+) 1020 WP_254467366.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22863.12 Da        Isoelectric Point: 7.3616

>NTDB_id=706055 NL778_RS07050 WP_012313420.1 1547910..1548545(+) (exbB) [Pseudomonas putida strain HSM-C2]
MWELVKSGGWMMLPIILSSIAAMAIVAERLWTLRASRVTPPHLLGQVWMWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEESASRVIHELERYISTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGSQMTANAAVLASGISKALVTTA
AGLMVGIPAVFFHRFLLRRIDELVVGMEQEAIKLVEVIQGDREVEVAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=706055 NL778_RS07050 WP_012313420.1 1547910..1548545(+) (exbB) [Pseudomonas putida strain HSM-C2]
GTGTGGGAATTGGTCAAGTCCGGTGGTTGGATGATGCTGCCAATCATTCTGAGCTCCATCGCTGCCATGGCTATCGTCGC
CGAGCGCCTGTGGACCCTGCGCGCCAGCCGCGTTACCCCGCCGCACCTGCTGGGCCAGGTGTGGATGTGGATCAAGGACA
AGCAGCTCACCAGTGACAAGCTCAAGGCTCTGCGCGCCGATTCGCCCCTGGGTGAGATTCTCGCTGCGGGCCTGGCCAAC
TCGCGCCATGGCCGTGAAATCATGAAAGAGTGCATCGAGGAGTCTGCCTCGCGGGTCATCCATGAACTGGAACGCTATAT
CAGCACCCTCGGTACCATCGCCGCGATGGCCCCGCTGCTCGGCCTGCTGGGTACCGTGCTGGGCATGATCGATATCTTCA
GCGCCTTCATGGGGTCGCAGATGACAGCCAATGCCGCAGTGCTGGCCAGTGGTATCTCCAAGGCTCTTGTCACTACGGCG
GCCGGCCTGATGGTCGGCATCCCGGCGGTGTTCTTCCACCGCTTCCTGCTGCGGCGCATCGACGAACTGGTGGTGGGCAT
GGAGCAAGAGGCGATCAAGCTGGTGGAGGTCATCCAGGGCGACCGCGAAGTCGAAGTGGCCGGAGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.517

100

0.815