Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   NLW79_RS18945 Genome accession   NZ_CP100651
Coordinates   3661423..3662112 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus halotolerans strain MEC_B334     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3656423..3667112
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NLW79_RS18910 (NLW79_18910) flgN 3656613..3657095 (-) 483 WP_254517898.1 flagellar protein FlgN -
  NLW79_RS18915 (NLW79_18915) flgM 3657110..3657376 (-) 267 WP_024123025.1 flagellar biosynthesis anti-sigma factor FlgM -
  NLW79_RS18920 (NLW79_18920) - 3657456..3657875 (-) 420 WP_024123026.1 TIGR03826 family flagellar region protein -
  NLW79_RS18925 (NLW79_18925) comFC 3657949..3658671 (-) 723 WP_142396176.1 double zinc ribbon domain-containing protein Machinery gene
  NLW79_RS18930 (NLW79_18930) - 3658635..3658931 (-) 297 WP_024123028.1 competence protein ComFB -
  NLW79_RS18935 (NLW79_18935) comFA 3658977..3660374 (-) 1398 WP_106021953.1 ATP-dependent helicase ComFA Machinery gene
  NLW79_RS18940 (NLW79_18940) - 3660481..3661326 (-) 846 WP_106019639.1 DegV family protein -
  NLW79_RS18945 (NLW79_18945) degU 3661423..3662112 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  NLW79_RS18950 (NLW79_18950) degS 3662195..3663352 (-) 1158 WP_024123030.1 two-component sensor histidine kinase DegS Regulator
  NLW79_RS18955 (NLW79_18955) - 3663569..3664222 (+) 654 WP_044159478.1 YigZ family protein -
  NLW79_RS18960 (NLW79_18960) - 3664222..3665400 (+) 1179 WP_024123032.1 LCP family protein -
  NLW79_RS18965 (NLW79_18965) - 3665472..3666548 (-) 1077 WP_151174552.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=706038 NLW79_RS18945 WP_003219701.1 3661423..3662112(-) (degU) [Bacillus halotolerans strain MEC_B334]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=706038 NLW79_RS18945 WP_003219701.1 3661423..3662112(-) (degU) [Bacillus halotolerans strain MEC_B334]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAGCGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCGGAAGGAGACGACGGAGATGAAGCGGCTCGTATCGTTGAGCACTATCATCCTGATGTCGTGA
TCATGGATATCAATATGCCGAACGTAAATGGCGTGGAAGCTACAAAGCAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAGAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACACTAATTGAAGCGGTTAAAGTAGTTGCCGAGGGCGGTTCTTACCTTCACCCGAAGGTTACTCACA
ACCTCGTAAACGAATTCCGACGTCTTGCAACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTCTATCCAGAGATTCGC
AGACCATTACATATTTTAACAAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGCATCGG
TGAATCATTGTTTATCAGTGAAAAAACTGTTAAAAACCATGTCAGCAATATCTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTGGTGGTCGCCATTAAAAATGGTTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1